Gene : Cagra.3501s0171 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  171
Name:  ? Cagra.3501s0171 Secondary Identifier:  ? PAC:28902337
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-735 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3501s0171 0.5kb upstream 0.5kb upstream 1750 true Scaffold3501: 593972-595721 Capsella grandiflora
Cagra.3501s0171 0.5kb upstream 0.5kb upstream 500 false Scaffold3501: 595222-595721 Capsella grandiflora
Cagra.3501s0171 0.5kb downstream 0.5kb downstream 1750 true Scaffold3501: 593472-595221 Capsella grandiflora
Cagra.3501s0171 0.5kb downstream 0.5kb downstream 500 false Scaffold3501: 593472-593971 Capsella grandiflora
Cagra.3501s0171 1.0kb upstream 1.0kb upstream 2250 true Scaffold3501: 593972-596221 Capsella grandiflora
Cagra.3501s0171 1.0kb upstream 1.0kb upstream 1000 false Scaffold3501: 595222-596221 Capsella grandiflora
Cagra.3501s0171 1.0kb downstream 1.0kb downstream 2250 true Scaffold3501: 592972-595221 Capsella grandiflora
Cagra.3501s0171 1.0kb downstream 1.0kb downstream 1000 false Scaffold3501: 592972-593971 Capsella grandiflora
Cagra.3501s0171 2.0kb upstream 2.0kb upstream 3250 true Scaffold3501: 593972-597221 Capsella grandiflora
Cagra.3501s0171 2.0kb upstream 2.0kb upstream 2000 false Scaffold3501: 595222-597221 Capsella grandiflora
Cagra.3501s0171 2.0kb downstream 2.0kb downstream 3250 true Scaffold3501: 591972-595221 Capsella grandiflora
Cagra.3501s0171 2.0kb downstream 2.0kb downstream 2000 false Scaffold3501: 591972-593971 Capsella grandiflora
Cagra.3501s0171 5.0kb upstream 5.0kb upstream 6250 true Scaffold3501: 593972-600221 Capsella grandiflora
Cagra.3501s0171 5.0kb upstream 5.0kb upstream 5000 false Scaffold3501: 595222-600221 Capsella grandiflora
Cagra.3501s0171 5.0kb downstream 5.0kb downstream 6250 true Scaffold3501: 588972-595221 Capsella grandiflora
Cagra.3501s0171 5.0kb downstream 5.0kb downstream 5000 false Scaffold3501: 588972-593971 Capsella grandiflora
Cagra.3501s0171 10.0kb upstream 10.0kb upstream 8320 true Scaffold3501: 593972-602291 Capsella grandiflora
Cagra.3501s0171 10.0kb upstream 10.0kb upstream 7070 false Scaffold3501: 595222-602291 Capsella grandiflora
Cagra.3501s0171 10.0kb downstream 10.0kb downstream 11250 true Scaffold3501: 583972-595221 Capsella grandiflora
Cagra.3501s0171 10.0kb downstream 10.0kb downstream 10000 false Scaffold3501: 583972-593971 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380510 5261 Brassicaceae View MSA
123828498 5264 Brassicales-Malvales View MSA
124339249 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain