Gene : Cagra.3514s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13370 - RNA METHYLASE-RELATED Genomic Order:  4
Name:  ? Cagra.3514s0004 Secondary Identifier:  ? PAC:28906012
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6829 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3514s0004 0.5kb upstream 0.5kb upstream 2343 true Scaffold3514: 11660-14002 Capsella grandiflora
Cagra.3514s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold3514: 11660-12159 Capsella grandiflora
Cagra.3514s0004 0.5kb downstream 0.5kb downstream 2343 true Scaffold3514: 12160-14502 Capsella grandiflora
Cagra.3514s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold3514: 14003-14502 Capsella grandiflora
Cagra.3514s0004 1.0kb upstream 1.0kb upstream 2843 true Scaffold3514: 11160-14002 Capsella grandiflora
Cagra.3514s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold3514: 11160-12159 Capsella grandiflora
Cagra.3514s0004 1.0kb downstream 1.0kb downstream 2843 true Scaffold3514: 12160-15002 Capsella grandiflora
Cagra.3514s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold3514: 14003-15002 Capsella grandiflora
Cagra.3514s0004 2.0kb upstream 2.0kb upstream 3843 true Scaffold3514: 10160-14002 Capsella grandiflora
Cagra.3514s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold3514: 10160-12159 Capsella grandiflora
Cagra.3514s0004 2.0kb downstream 2.0kb downstream 3843 true Scaffold3514: 12160-16002 Capsella grandiflora
Cagra.3514s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold3514: 14003-16002 Capsella grandiflora
Cagra.3514s0004 5.0kb upstream 5.0kb upstream 6843 true Scaffold3514: 7160-14002 Capsella grandiflora
Cagra.3514s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold3514: 7160-12159 Capsella grandiflora
Cagra.3514s0004 5.0kb downstream 5.0kb downstream 6843 true Scaffold3514: 12160-19002 Capsella grandiflora
Cagra.3514s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold3514: 14003-19002 Capsella grandiflora
Cagra.3514s0004 10.0kb upstream 10.0kb upstream 11843 true Scaffold3514: 2160-14002 Capsella grandiflora
Cagra.3514s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold3514: 2160-12159 Capsella grandiflora
Cagra.3514s0004 10.0kb downstream 10.0kb downstream 11843 true Scaffold3514: 12160-24002 Capsella grandiflora
Cagra.3514s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold3514: 14003-24002 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366323 5261 Brassicaceae View MSA
123829804 5264 Brassicales-Malvales View MSA
124342748 5266 SBM View MSA
124252860 5268 Malvidae View MSA
124065317 5270 Rosid View MSA
123738561 5271 Pentapetalae View MSA
122788498 5272 Eudicot View MSA
122048014 5273 Angiosperm View MSA
121347099 5274 Embryophyte View MSA
123424311 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain