Gene : Cagra.3474s0020 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12143 - PEPTIDE N-GLYCANASE PNGASE -RELATED Genomic Order:  20
Name:  ? Cagra.3474s0020 Secondary Identifier:  ? PAC:28917918
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3474s0020 0.5kb upstream 0.5kb upstream 4774 true Scaffold3474: 132050-136823 Capsella grandiflora
Cagra.3474s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold3474: 132050-132549 Capsella grandiflora
Cagra.3474s0020 0.5kb downstream 0.5kb downstream 4774 true Scaffold3474: 132550-137323 Capsella grandiflora
Cagra.3474s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold3474: 136824-137323 Capsella grandiflora
Cagra.3474s0020 1.0kb upstream 1.0kb upstream 5274 true Scaffold3474: 131550-136823 Capsella grandiflora
Cagra.3474s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold3474: 131550-132549 Capsella grandiflora
Cagra.3474s0020 1.0kb downstream 1.0kb downstream 5274 true Scaffold3474: 132550-137823 Capsella grandiflora
Cagra.3474s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold3474: 136824-137823 Capsella grandiflora
Cagra.3474s0020 2.0kb upstream 2.0kb upstream 6274 true Scaffold3474: 130550-136823 Capsella grandiflora
Cagra.3474s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold3474: 130550-132549 Capsella grandiflora
Cagra.3474s0020 2.0kb downstream 2.0kb downstream 6274 true Scaffold3474: 132550-138823 Capsella grandiflora
Cagra.3474s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold3474: 136824-138823 Capsella grandiflora
Cagra.3474s0020 5.0kb upstream 5.0kb upstream 9274 true Scaffold3474: 127550-136823 Capsella grandiflora
Cagra.3474s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold3474: 127550-132549 Capsella grandiflora
Cagra.3474s0020 5.0kb downstream 5.0kb downstream 9274 true Scaffold3474: 132550-141823 Capsella grandiflora
Cagra.3474s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold3474: 136824-141823 Capsella grandiflora
Cagra.3474s0020 10.0kb upstream 10.0kb upstream 14274 true Scaffold3474: 122550-136823 Capsella grandiflora
Cagra.3474s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold3474: 122550-132549 Capsella grandiflora
Cagra.3474s0020 10.0kb downstream 10.0kb downstream 14274 true Scaffold3474: 132550-146823 Capsella grandiflora
Cagra.3474s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold3474: 136824-146823 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368602 5261 Brassicaceae View MSA
123833077 5264 Brassicales-Malvales View MSA
124343558 5266 SBM View MSA
124245270 5268 Malvidae View MSA
124067325 5270 Rosid View MSA
123748709 5271 Pentapetalae View MSA
122792464 5272 Eudicot View MSA
122051116 5273 Angiosperm View MSA
121344308 5274 Embryophyte View MSA
123425533 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain