Gene : Cagra.3395s0002 C. grandiflora v1.1
Defline:  (1 of 12) PF09425 - Divergent CCT motif (CCT_2) Genomic Order:  2
Name:  ? Cagra.3395s0002 Secondary Identifier:  ? PAC:28911889
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3395s0002 0.5kb upstream 0.5kb upstream 3215 true Scaffold3395: 2483-5697 Capsella grandiflora
Cagra.3395s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold3395: 5198-5697 Capsella grandiflora
Cagra.3395s0002 0.5kb downstream 0.5kb downstream 3215 true Scaffold3395: 1983-5197 Capsella grandiflora
Cagra.3395s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold3395: 1983-2482 Capsella grandiflora
Cagra.3395s0002 1.0kb upstream 1.0kb upstream 3715 true Scaffold3395: 2483-6197 Capsella grandiflora
Cagra.3395s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold3395: 5198-6197 Capsella grandiflora
Cagra.3395s0002 1.0kb downstream 1.0kb downstream 3715 true Scaffold3395: 1483-5197 Capsella grandiflora
Cagra.3395s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold3395: 1483-2482 Capsella grandiflora
Cagra.3395s0002 2.0kb upstream 2.0kb upstream 4715 true Scaffold3395: 2483-7197 Capsella grandiflora
Cagra.3395s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold3395: 5198-7197 Capsella grandiflora
Cagra.3395s0002 2.0kb downstream 2.0kb downstream 4715 true Scaffold3395: 483-5197 Capsella grandiflora
Cagra.3395s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold3395: 483-2482 Capsella grandiflora
Cagra.3395s0002 5.0kb upstream 5.0kb upstream 7715 true Scaffold3395: 2483-10197 Capsella grandiflora
Cagra.3395s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold3395: 5198-10197 Capsella grandiflora
Cagra.3395s0002 5.0kb downstream 5.0kb downstream 5197 true Scaffold3395: 1-5197 Capsella grandiflora
Cagra.3395s0002 5.0kb downstream 5.0kb downstream 2482 false Scaffold3395: 1-2482 Capsella grandiflora
Cagra.3395s0002 10.0kb upstream 10.0kb upstream 12715 true Scaffold3395: 2483-15197 Capsella grandiflora
Cagra.3395s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold3395: 5198-15197 Capsella grandiflora
Cagra.3395s0002 10.0kb downstream 10.0kb downstream 5197 true Scaffold3395: 1-5197 Capsella grandiflora
Cagra.3395s0002 10.0kb downstream 10.0kb downstream 2482 false Scaffold3395: 1-2482 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122337979 5261 Brassicaceae View MSA
123838239 5264 Brassicales-Malvales View MSA
124346539 5266 SBM View MSA
124245964 5268 Malvidae View MSA
124071929 5270 Rosid View MSA
123743531 5271 Pentapetalae View MSA
122792632 5272 Eudicot View MSA
122044568 5273 Angiosperm View MSA
121310313 5274 Embryophyte View MSA
123347830 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain