Gene : Cagra.3395s0001 C. grandiflora v1.1
Defline:  (1 of 3) 1.13.11.53 - Acireductone dioxygenase (Ni(2+)-requiring) / E-2 Genomic Order:  1
Name:  ? Cagra.3395s0001 Secondary Identifier:  ? PAC:28911894
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-4361 Capsella grandiflora pathologic  
Cgrandiflora PWY-5389 Capsella grandiflora pathologic  
Cgrandiflora PWY-7270 Capsella grandiflora pathologic  
Cgrandiflora PWY-7528 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3395s0001 0.5kb upstream 0.5kb upstream 2521 true Scaffold3395: 27-2547 Capsella grandiflora
Cagra.3395s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold3395: 2048-2547 Capsella grandiflora
Cagra.3395s0001 0.5kb downstream 0.5kb downstream 2047 true Scaffold3395: 1-2047 Capsella grandiflora
Cagra.3395s0001 0.5kb downstream 0.5kb downstream 26 false Scaffold3395: 1-26 Capsella grandiflora
Cagra.3395s0001 1.0kb upstream 1.0kb upstream 3021 true Scaffold3395: 27-3047 Capsella grandiflora
Cagra.3395s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold3395: 2048-3047 Capsella grandiflora
Cagra.3395s0001 1.0kb downstream 1.0kb downstream 2047 true Scaffold3395: 1-2047 Capsella grandiflora
Cagra.3395s0001 1.0kb downstream 1.0kb downstream 26 false Scaffold3395: 1-26 Capsella grandiflora
Cagra.3395s0001 2.0kb upstream 2.0kb upstream 4021 true Scaffold3395: 27-4047 Capsella grandiflora
Cagra.3395s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold3395: 2048-4047 Capsella grandiflora
Cagra.3395s0001 2.0kb downstream 2.0kb downstream 2047 true Scaffold3395: 1-2047 Capsella grandiflora
Cagra.3395s0001 2.0kb downstream 2.0kb downstream 26 false Scaffold3395: 1-26 Capsella grandiflora
Cagra.3395s0001 5.0kb upstream 5.0kb upstream 7021 true Scaffold3395: 27-7047 Capsella grandiflora
Cagra.3395s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold3395: 2048-7047 Capsella grandiflora
Cagra.3395s0001 5.0kb downstream 5.0kb downstream 2047 true Scaffold3395: 1-2047 Capsella grandiflora
Cagra.3395s0001 5.0kb downstream 5.0kb downstream 26 false Scaffold3395: 1-26 Capsella grandiflora
Cagra.3395s0001 10.0kb upstream 10.0kb upstream 12021 true Scaffold3395: 27-12047 Capsella grandiflora
Cagra.3395s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold3395: 2048-12047 Capsella grandiflora
Cagra.3395s0001 10.0kb downstream 10.0kb downstream 2047 true Scaffold3395: 1-2047 Capsella grandiflora
Cagra.3395s0001 10.0kb downstream 10.0kb downstream 26 false Scaffold3395: 1-26 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378122 5261 Brassicaceae View MSA
123834658 5264 Brassicales-Malvales View MSA
124340730 5266 SBM View MSA
124241214 5268 Malvidae View MSA
124070123 5270 Rosid View MSA
123741202 5271 Pentapetalae View MSA
122793339 5272 Eudicot View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain