Gene : Cagra.3449s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11709:SF94 - LACCASE-15 Genomic Order:  2
Name:  ? Cagra.3449s0002 Secondary Identifier:  ? PAC:28917408
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3449s0002 0.5kb upstream 0.5kb upstream 2891 true Scaffold3449: 4824-7714 Capsella grandiflora
Cagra.3449s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold3449: 4824-5323 Capsella grandiflora
Cagra.3449s0002 0.5kb downstream 0.5kb downstream 2891 true Scaffold3449: 5324-8214 Capsella grandiflora
Cagra.3449s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold3449: 7715-8214 Capsella grandiflora
Cagra.3449s0002 1.0kb upstream 1.0kb upstream 3391 true Scaffold3449: 4324-7714 Capsella grandiflora
Cagra.3449s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold3449: 4324-5323 Capsella grandiflora
Cagra.3449s0002 1.0kb downstream 1.0kb downstream 3391 true Scaffold3449: 5324-8714 Capsella grandiflora
Cagra.3449s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold3449: 7715-8714 Capsella grandiflora
Cagra.3449s0002 2.0kb upstream 2.0kb upstream 4391 true Scaffold3449: 3324-7714 Capsella grandiflora
Cagra.3449s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold3449: 3324-5323 Capsella grandiflora
Cagra.3449s0002 2.0kb downstream 2.0kb downstream 4391 true Scaffold3449: 5324-9714 Capsella grandiflora
Cagra.3449s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold3449: 7715-9714 Capsella grandiflora
Cagra.3449s0002 5.0kb upstream 5.0kb upstream 7391 true Scaffold3449: 324-7714 Capsella grandiflora
Cagra.3449s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold3449: 324-5323 Capsella grandiflora
Cagra.3449s0002 5.0kb downstream 5.0kb downstream 7391 true Scaffold3449: 5324-12714 Capsella grandiflora
Cagra.3449s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold3449: 7715-12714 Capsella grandiflora
Cagra.3449s0002 10.0kb upstream 10.0kb upstream 7714 true Scaffold3449: 1-7714 Capsella grandiflora
Cagra.3449s0002 10.0kb upstream 10.0kb upstream 5323 false Scaffold3449: 1-5323 Capsella grandiflora
Cagra.3449s0002 10.0kb downstream 10.0kb downstream 12391 true Scaffold3449: 5324-17714 Capsella grandiflora
Cagra.3449s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold3449: 7715-17714 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367012 5261 Brassicaceae View MSA
123835979 5264 Brassicales-Malvales View MSA
124344617 5266 SBM View MSA
124253162 5268 Malvidae View MSA
124074925 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain