Gene : Cagra.4138s0013 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23416:SF2 - SERINE ACETYLTRANSFERASE 5 Genomic Order:  13
Name:  ? Cagra.4138s0013 Secondary Identifier:  ? PAC:28902023
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CYSTSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-6936 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4138s0013 0.5kb upstream 0.5kb upstream 1902 true Scaffold4138: 58721-60622 Capsella grandiflora
Cagra.4138s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold4138: 58721-59220 Capsella grandiflora
Cagra.4138s0013 0.5kb downstream 0.5kb downstream 1902 true Scaffold4138: 59221-61122 Capsella grandiflora
Cagra.4138s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold4138: 60623-61122 Capsella grandiflora
Cagra.4138s0013 1.0kb upstream 1.0kb upstream 2402 true Scaffold4138: 58221-60622 Capsella grandiflora
Cagra.4138s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold4138: 58221-59220 Capsella grandiflora
Cagra.4138s0013 1.0kb downstream 1.0kb downstream 2402 true Scaffold4138: 59221-61622 Capsella grandiflora
Cagra.4138s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold4138: 60623-61622 Capsella grandiflora
Cagra.4138s0013 2.0kb upstream 2.0kb upstream 3402 true Scaffold4138: 57221-60622 Capsella grandiflora
Cagra.4138s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold4138: 57221-59220 Capsella grandiflora
Cagra.4138s0013 2.0kb downstream 2.0kb downstream 3402 true Scaffold4138: 59221-62622 Capsella grandiflora
Cagra.4138s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold4138: 60623-62622 Capsella grandiflora
Cagra.4138s0013 5.0kb upstream 5.0kb upstream 6402 true Scaffold4138: 54221-60622 Capsella grandiflora
Cagra.4138s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold4138: 54221-59220 Capsella grandiflora
Cagra.4138s0013 5.0kb downstream 5.0kb downstream 6402 true Scaffold4138: 59221-65622 Capsella grandiflora
Cagra.4138s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold4138: 60623-65622 Capsella grandiflora
Cagra.4138s0013 10.0kb upstream 10.0kb upstream 11402 true Scaffold4138: 49221-60622 Capsella grandiflora
Cagra.4138s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold4138: 49221-59220 Capsella grandiflora
Cagra.4138s0013 10.0kb downstream 10.0kb downstream 11402 true Scaffold4138: 59221-70622 Capsella grandiflora
Cagra.4138s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold4138: 60623-70622 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368813 5261 Brassicaceae View MSA
123828462 5264 Brassicales-Malvales View MSA
124338589 5266 SBM View MSA
124250792 5268 Malvidae View MSA
124068098 5270 Rosid View MSA
123738273 5271 Pentapetalae View MSA
122789751 5272 Eudicot View MSA
122047158 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain