Gene : Cagra.4138s0021 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22594:SF34 - ASPARAGINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  21
Name:  ? Cagra.4138s0021 Secondary Identifier:  ? PAC:28902032
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4138s0021 0.5kb upstream 0.5kb upstream 2975 true Scaffold4138: 82085-85059 Capsella grandiflora
Cagra.4138s0021 0.5kb upstream 0.5kb upstream 500 false Scaffold4138: 84560-85059 Capsella grandiflora
Cagra.4138s0021 0.5kb downstream 0.5kb downstream 2975 true Scaffold4138: 81585-84559 Capsella grandiflora
Cagra.4138s0021 0.5kb downstream 0.5kb downstream 500 false Scaffold4138: 81585-82084 Capsella grandiflora
Cagra.4138s0021 1.0kb upstream 1.0kb upstream 3475 true Scaffold4138: 82085-85559 Capsella grandiflora
Cagra.4138s0021 1.0kb upstream 1.0kb upstream 1000 false Scaffold4138: 84560-85559 Capsella grandiflora
Cagra.4138s0021 1.0kb downstream 1.0kb downstream 3475 true Scaffold4138: 81085-84559 Capsella grandiflora
Cagra.4138s0021 1.0kb downstream 1.0kb downstream 1000 false Scaffold4138: 81085-82084 Capsella grandiflora
Cagra.4138s0021 2.0kb upstream 2.0kb upstream 4475 true Scaffold4138: 82085-86559 Capsella grandiflora
Cagra.4138s0021 2.0kb upstream 2.0kb upstream 2000 false Scaffold4138: 84560-86559 Capsella grandiflora
Cagra.4138s0021 2.0kb downstream 2.0kb downstream 4475 true Scaffold4138: 80085-84559 Capsella grandiflora
Cagra.4138s0021 2.0kb downstream 2.0kb downstream 2000 false Scaffold4138: 80085-82084 Capsella grandiflora
Cagra.4138s0021 5.0kb upstream 5.0kb upstream 7475 true Scaffold4138: 82085-89559 Capsella grandiflora
Cagra.4138s0021 5.0kb upstream 5.0kb upstream 5000 false Scaffold4138: 84560-89559 Capsella grandiflora
Cagra.4138s0021 5.0kb downstream 5.0kb downstream 7475 true Scaffold4138: 77085-84559 Capsella grandiflora
Cagra.4138s0021 5.0kb downstream 5.0kb downstream 5000 false Scaffold4138: 77085-82084 Capsella grandiflora
Cagra.4138s0021 10.0kb upstream 10.0kb upstream 12475 true Scaffold4138: 82085-94559 Capsella grandiflora
Cagra.4138s0021 10.0kb upstream 10.0kb upstream 10000 false Scaffold4138: 84560-94559 Capsella grandiflora
Cagra.4138s0021 10.0kb downstream 10.0kb downstream 12475 true Scaffold4138: 72085-84559 Capsella grandiflora
Cagra.4138s0021 10.0kb downstream 10.0kb downstream 10000 false Scaffold4138: 72085-82084 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362988 5261 Brassicaceae View MSA
123829828 5264 Brassicales-Malvales View MSA
124344559 5266 SBM View MSA
124246286 5268 Malvidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain