Gene : Cagra.4138s0017 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23382:SF5 - MALATE DEHYDROGENASE Genomic Order:  17
Name:  ? Cagra.4138s0017 Secondary Identifier:  ? PAC:28902004
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4138s0017 0.5kb upstream 0.5kb upstream 1633 true Scaffold4138: 74539-76171 Capsella grandiflora
Cagra.4138s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold4138: 75672-76171 Capsella grandiflora
Cagra.4138s0017 0.5kb downstream 0.5kb downstream 1633 true Scaffold4138: 74039-75671 Capsella grandiflora
Cagra.4138s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold4138: 74039-74538 Capsella grandiflora
Cagra.4138s0017 1.0kb upstream 1.0kb upstream 2133 true Scaffold4138: 74539-76671 Capsella grandiflora
Cagra.4138s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold4138: 75672-76671 Capsella grandiflora
Cagra.4138s0017 1.0kb downstream 1.0kb downstream 2133 true Scaffold4138: 73539-75671 Capsella grandiflora
Cagra.4138s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold4138: 73539-74538 Capsella grandiflora
Cagra.4138s0017 2.0kb upstream 2.0kb upstream 3133 true Scaffold4138: 74539-77671 Capsella grandiflora
Cagra.4138s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold4138: 75672-77671 Capsella grandiflora
Cagra.4138s0017 2.0kb downstream 2.0kb downstream 3133 true Scaffold4138: 72539-75671 Capsella grandiflora
Cagra.4138s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold4138: 72539-74538 Capsella grandiflora
Cagra.4138s0017 5.0kb upstream 5.0kb upstream 6133 true Scaffold4138: 74539-80671 Capsella grandiflora
Cagra.4138s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold4138: 75672-80671 Capsella grandiflora
Cagra.4138s0017 5.0kb downstream 5.0kb downstream 6133 true Scaffold4138: 69539-75671 Capsella grandiflora
Cagra.4138s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold4138: 69539-74538 Capsella grandiflora
Cagra.4138s0017 10.0kb upstream 10.0kb upstream 11133 true Scaffold4138: 74539-85671 Capsella grandiflora
Cagra.4138s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold4138: 75672-85671 Capsella grandiflora
Cagra.4138s0017 10.0kb downstream 10.0kb downstream 11133 true Scaffold4138: 64539-75671 Capsella grandiflora
Cagra.4138s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold4138: 64539-74538 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361174 5261 Brassicaceae View MSA
123830714 5264 Brassicales-Malvales View MSA
124349239 5266 SBM View MSA
124248989 5268 Malvidae View MSA
124071542 5270 Rosid View MSA
123746984 5271 Pentapetalae View MSA
122786587 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain