Gene : Cagra.4169s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13069:SF11 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 6 Genomic Order:  5
Name:  ? Cagra.4169s0005 Secondary Identifier:  ? PAC:28906634
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6829 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4169s0005 0.5kb upstream 0.5kb upstream 2367 true Scaffold4169: 20578-22944 Capsella grandiflora
Cagra.4169s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold4169: 20578-21077 Capsella grandiflora
Cagra.4169s0005 0.5kb downstream 0.5kb downstream 2367 true Scaffold4169: 21078-23444 Capsella grandiflora
Cagra.4169s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold4169: 22945-23444 Capsella grandiflora
Cagra.4169s0005 1.0kb upstream 1.0kb upstream 2867 true Scaffold4169: 20078-22944 Capsella grandiflora
Cagra.4169s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold4169: 20078-21077 Capsella grandiflora
Cagra.4169s0005 1.0kb downstream 1.0kb downstream 2867 true Scaffold4169: 21078-23944 Capsella grandiflora
Cagra.4169s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold4169: 22945-23944 Capsella grandiflora
Cagra.4169s0005 2.0kb upstream 2.0kb upstream 3867 true Scaffold4169: 19078-22944 Capsella grandiflora
Cagra.4169s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold4169: 19078-21077 Capsella grandiflora
Cagra.4169s0005 2.0kb downstream 2.0kb downstream 3867 true Scaffold4169: 21078-24944 Capsella grandiflora
Cagra.4169s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold4169: 22945-24944 Capsella grandiflora
Cagra.4169s0005 5.0kb upstream 5.0kb upstream 6867 true Scaffold4169: 16078-22944 Capsella grandiflora
Cagra.4169s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold4169: 16078-21077 Capsella grandiflora
Cagra.4169s0005 5.0kb downstream 5.0kb downstream 6867 true Scaffold4169: 21078-27944 Capsella grandiflora
Cagra.4169s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold4169: 22945-27944 Capsella grandiflora
Cagra.4169s0005 10.0kb upstream 10.0kb upstream 11867 true Scaffold4169: 11078-22944 Capsella grandiflora
Cagra.4169s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold4169: 11078-21077 Capsella grandiflora
Cagra.4169s0005 10.0kb downstream 10.0kb downstream 11867 true Scaffold4169: 21078-32944 Capsella grandiflora
Cagra.4169s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold4169: 22945-32944 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364039 5261 Brassicaceae View MSA
123835550 5264 Brassicales-Malvales View MSA
124341724 5266 SBM View MSA
124239519 5268 Malvidae View MSA
124065403 5270 Rosid View MSA
123740890 5271 Pentapetalae View MSA
122791933 5272 Eudicot View MSA
122044180 5273 Angiosperm View MSA
121345583 5274 Embryophyte View MSA
123428839 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain