Gene : Cagra.4169s0009 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31747:SF3 - PROTEIN LSD1 Genomic Order:  9
Name:  ? Cagra.4169s0009 Secondary Identifier:  ? PAC:28906637
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4169s0009 0.5kb upstream 0.5kb upstream 2858 true Scaffold4169: 31688-34545 Capsella grandiflora
Cagra.4169s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold4169: 31688-32187 Capsella grandiflora
Cagra.4169s0009 0.5kb downstream 0.5kb downstream 2858 true Scaffold4169: 32188-35045 Capsella grandiflora
Cagra.4169s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold4169: 34546-35045 Capsella grandiflora
Cagra.4169s0009 1.0kb upstream 1.0kb upstream 3358 true Scaffold4169: 31188-34545 Capsella grandiflora
Cagra.4169s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold4169: 31188-32187 Capsella grandiflora
Cagra.4169s0009 1.0kb downstream 1.0kb downstream 3358 true Scaffold4169: 32188-35545 Capsella grandiflora
Cagra.4169s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold4169: 34546-35545 Capsella grandiflora
Cagra.4169s0009 2.0kb upstream 2.0kb upstream 4358 true Scaffold4169: 30188-34545 Capsella grandiflora
Cagra.4169s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold4169: 30188-32187 Capsella grandiflora
Cagra.4169s0009 2.0kb downstream 2.0kb downstream 4358 true Scaffold4169: 32188-36545 Capsella grandiflora
Cagra.4169s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold4169: 34546-36545 Capsella grandiflora
Cagra.4169s0009 5.0kb upstream 5.0kb upstream 7358 true Scaffold4169: 27188-34545 Capsella grandiflora
Cagra.4169s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold4169: 27188-32187 Capsella grandiflora
Cagra.4169s0009 5.0kb downstream 5.0kb downstream 7358 true Scaffold4169: 32188-39545 Capsella grandiflora
Cagra.4169s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold4169: 34546-39545 Capsella grandiflora
Cagra.4169s0009 10.0kb upstream 10.0kb upstream 12358 true Scaffold4169: 22188-34545 Capsella grandiflora
Cagra.4169s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold4169: 22188-32187 Capsella grandiflora
Cagra.4169s0009 10.0kb downstream 10.0kb downstream 12358 true Scaffold4169: 32188-44545 Capsella grandiflora
Cagra.4169s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold4169: 34546-44545 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375740 5261 Brassicaceae View MSA
123835854 5264 Brassicales-Malvales View MSA
124344171 5266 SBM View MSA
124253949 5268 Malvidae View MSA
124064125 5270 Rosid View MSA
123749218 5271 Pentapetalae View MSA
122793241 5272 Eudicot View MSA
122043941 5273 Angiosperm View MSA
121347680 5274 Embryophyte View MSA
123425652 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain