Gene : Cagra.4093s0010 C. grandiflora v1.1
Defline:  (1 of 1) 1.13.11.70 - All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Genomic Order:  10
Name:  ? Cagra.4093s0010 Secondary Identifier:  ? PAC:28897257
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4093s0010 0.5kb upstream 0.5kb upstream 3100 true Scaffold4093: 43004-46103 Capsella grandiflora
Cagra.4093s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold4093: 43004-43503 Capsella grandiflora
Cagra.4093s0010 0.5kb downstream 0.5kb downstream 3100 true Scaffold4093: 43504-46603 Capsella grandiflora
Cagra.4093s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold4093: 46104-46603 Capsella grandiflora
Cagra.4093s0010 1.0kb upstream 1.0kb upstream 3600 true Scaffold4093: 42504-46103 Capsella grandiflora
Cagra.4093s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold4093: 42504-43503 Capsella grandiflora
Cagra.4093s0010 1.0kb downstream 1.0kb downstream 3600 true Scaffold4093: 43504-47103 Capsella grandiflora
Cagra.4093s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold4093: 46104-47103 Capsella grandiflora
Cagra.4093s0010 2.0kb upstream 2.0kb upstream 4600 true Scaffold4093: 41504-46103 Capsella grandiflora
Cagra.4093s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold4093: 41504-43503 Capsella grandiflora
Cagra.4093s0010 2.0kb downstream 2.0kb downstream 4600 true Scaffold4093: 43504-48103 Capsella grandiflora
Cagra.4093s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold4093: 46104-48103 Capsella grandiflora
Cagra.4093s0010 5.0kb upstream 5.0kb upstream 7600 true Scaffold4093: 38504-46103 Capsella grandiflora
Cagra.4093s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold4093: 38504-43503 Capsella grandiflora
Cagra.4093s0010 5.0kb downstream 5.0kb downstream 7600 true Scaffold4093: 43504-51103 Capsella grandiflora
Cagra.4093s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold4093: 46104-51103 Capsella grandiflora
Cagra.4093s0010 10.0kb upstream 10.0kb upstream 12600 true Scaffold4093: 33504-46103 Capsella grandiflora
Cagra.4093s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold4093: 33504-43503 Capsella grandiflora
Cagra.4093s0010 10.0kb downstream 10.0kb downstream 12600 true Scaffold4093: 43504-56103 Capsella grandiflora
Cagra.4093s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold4093: 46104-56103 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370385 5261 Brassicaceae View MSA
123840885 5264 Brassicales-Malvales View MSA
124343885 5266 SBM View MSA
124238264 5268 Malvidae View MSA
124065320 5270 Rosid View MSA
123738795 5271 Pentapetalae View MSA
122791259 5272 Eudicot View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain