Gene : Cagra.4082s0003 C. grandiflora v1.1
Defline:  (1 of 3) PTHR22950:SF256 - AUXIN TRANSPORTER PROTEIN 1-RELATED Genomic Order:  3
Name:  ? Cagra.4082s0003 Secondary Identifier:  ? PAC:28896825
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4082s0003 0.5kb upstream 0.5kb upstream 4351 true Scaffold4082: 19929-24279 Capsella grandiflora
Cagra.4082s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold4082: 19929-20428 Capsella grandiflora
Cagra.4082s0003 0.5kb downstream 0.5kb downstream 4351 true Scaffold4082: 20429-24779 Capsella grandiflora
Cagra.4082s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold4082: 24280-24779 Capsella grandiflora
Cagra.4082s0003 1.0kb upstream 1.0kb upstream 4851 true Scaffold4082: 19429-24279 Capsella grandiflora
Cagra.4082s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold4082: 19429-20428 Capsella grandiflora
Cagra.4082s0003 1.0kb downstream 1.0kb downstream 4851 true Scaffold4082: 20429-25279 Capsella grandiflora
Cagra.4082s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold4082: 24280-25279 Capsella grandiflora
Cagra.4082s0003 2.0kb upstream 2.0kb upstream 5851 true Scaffold4082: 18429-24279 Capsella grandiflora
Cagra.4082s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold4082: 18429-20428 Capsella grandiflora
Cagra.4082s0003 2.0kb downstream 2.0kb downstream 5851 true Scaffold4082: 20429-26279 Capsella grandiflora
Cagra.4082s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold4082: 24280-26279 Capsella grandiflora
Cagra.4082s0003 5.0kb upstream 5.0kb upstream 8851 true Scaffold4082: 15429-24279 Capsella grandiflora
Cagra.4082s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold4082: 15429-20428 Capsella grandiflora
Cagra.4082s0003 5.0kb downstream 5.0kb downstream 8851 true Scaffold4082: 20429-29279 Capsella grandiflora
Cagra.4082s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold4082: 24280-29279 Capsella grandiflora
Cagra.4082s0003 10.0kb upstream 10.0kb upstream 13851 true Scaffold4082: 10429-24279 Capsella grandiflora
Cagra.4082s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold4082: 10429-20428 Capsella grandiflora
Cagra.4082s0003 10.0kb downstream 10.0kb downstream 13851 true Scaffold4082: 20429-34279 Capsella grandiflora
Cagra.4082s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold4082: 24280-34279 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371673 5261 Brassicaceae View MSA
123838810 5264 Brassicales-Malvales View MSA
124345069 5266 SBM View MSA
124237626 5268 Malvidae View MSA
124074044 5270 Rosid View MSA
123753033 5271 Pentapetalae View MSA
122796609 5272 Eudicot View MSA
122045744 5273 Angiosperm View MSA
121347395 5274 Embryophyte View MSA
123427582 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain