Gene : Cagra.3960s0005 C. grandiflora v1.1
Defline:  (1 of 15) PF06749 - Protein of unknown function (DUF1218) (DUF1218) Genomic Order:  5
Name:  ? Cagra.3960s0005 Secondary Identifier:  ? PAC:28896853
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3960s0005 0.5kb upstream 0.5kb upstream 2065 true Scaffold3960: 23645-25709 Capsella grandiflora
Cagra.3960s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold3960: 25210-25709 Capsella grandiflora
Cagra.3960s0005 0.5kb downstream 0.5kb downstream 2065 true Scaffold3960: 23145-25209 Capsella grandiflora
Cagra.3960s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold3960: 23145-23644 Capsella grandiflora
Cagra.3960s0005 1.0kb upstream 1.0kb upstream 2565 true Scaffold3960: 23645-26209 Capsella grandiflora
Cagra.3960s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold3960: 25210-26209 Capsella grandiflora
Cagra.3960s0005 1.0kb downstream 1.0kb downstream 2565 true Scaffold3960: 22645-25209 Capsella grandiflora
Cagra.3960s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold3960: 22645-23644 Capsella grandiflora
Cagra.3960s0005 2.0kb upstream 2.0kb upstream 3565 true Scaffold3960: 23645-27209 Capsella grandiflora
Cagra.3960s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold3960: 25210-27209 Capsella grandiflora
Cagra.3960s0005 2.0kb downstream 2.0kb downstream 3565 true Scaffold3960: 21645-25209 Capsella grandiflora
Cagra.3960s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold3960: 21645-23644 Capsella grandiflora
Cagra.3960s0005 5.0kb upstream 5.0kb upstream 6565 true Scaffold3960: 23645-30209 Capsella grandiflora
Cagra.3960s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold3960: 25210-30209 Capsella grandiflora
Cagra.3960s0005 5.0kb downstream 5.0kb downstream 6565 true Scaffold3960: 18645-25209 Capsella grandiflora
Cagra.3960s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold3960: 18645-23644 Capsella grandiflora
Cagra.3960s0005 10.0kb upstream 10.0kb upstream 10009 true Scaffold3960: 23645-33653 Capsella grandiflora
Cagra.3960s0005 10.0kb upstream 10.0kb upstream 8444 false Scaffold3960: 25210-33653 Capsella grandiflora
Cagra.3960s0005 10.0kb downstream 10.0kb downstream 11565 true Scaffold3960: 13645-25209 Capsella grandiflora
Cagra.3960s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold3960: 13645-23644 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026895 5273 Angiosperm View MSA
122375489 5261 Brassicaceae View MSA
123834799 5264 Brassicales-Malvales View MSA
124336813 5266 SBM View MSA
124240571 5268 Malvidae View MSA
124063310 5270 Rosid View MSA
123738532 5271 Pentapetalae View MSA
122795984 5272 Eudicot View MSA
121349405 5274 Embryophyte View MSA
123381298 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain