Gene : Cagra.4003s0034 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23012//PTHR23012:SF96 - MEMBRANE ASSOCIATED RING FINGER Genomic Order:  34
Name:  ? Cagra.4003s0034 Secondary Identifier:  ? PAC:28894830
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4003s0034 0.5kb upstream 0.5kb upstream 2878 true Scaffold4003: 138709-141586 Capsella grandiflora
Cagra.4003s0034 0.5kb upstream 0.5kb upstream 500 false Scaffold4003: 138709-139208 Capsella grandiflora
Cagra.4003s0034 0.5kb downstream 0.5kb downstream 2878 true Scaffold4003: 139209-142086 Capsella grandiflora
Cagra.4003s0034 0.5kb downstream 0.5kb downstream 500 false Scaffold4003: 141587-142086 Capsella grandiflora
Cagra.4003s0034 1.0kb upstream 1.0kb upstream 3378 true Scaffold4003: 138209-141586 Capsella grandiflora
Cagra.4003s0034 1.0kb upstream 1.0kb upstream 1000 false Scaffold4003: 138209-139208 Capsella grandiflora
Cagra.4003s0034 1.0kb downstream 1.0kb downstream 3378 true Scaffold4003: 139209-142586 Capsella grandiflora
Cagra.4003s0034 1.0kb downstream 1.0kb downstream 1000 false Scaffold4003: 141587-142586 Capsella grandiflora
Cagra.4003s0034 2.0kb upstream 2.0kb upstream 4378 true Scaffold4003: 137209-141586 Capsella grandiflora
Cagra.4003s0034 2.0kb upstream 2.0kb upstream 2000 false Scaffold4003: 137209-139208 Capsella grandiflora
Cagra.4003s0034 2.0kb downstream 2.0kb downstream 4378 true Scaffold4003: 139209-143586 Capsella grandiflora
Cagra.4003s0034 2.0kb downstream 2.0kb downstream 2000 false Scaffold4003: 141587-143586 Capsella grandiflora
Cagra.4003s0034 5.0kb upstream 5.0kb upstream 7378 true Scaffold4003: 134209-141586 Capsella grandiflora
Cagra.4003s0034 5.0kb upstream 5.0kb upstream 5000 false Scaffold4003: 134209-139208 Capsella grandiflora
Cagra.4003s0034 5.0kb downstream 5.0kb downstream 7378 true Scaffold4003: 139209-146586 Capsella grandiflora
Cagra.4003s0034 5.0kb downstream 5.0kb downstream 5000 false Scaffold4003: 141587-146586 Capsella grandiflora
Cagra.4003s0034 10.0kb upstream 10.0kb upstream 12378 true Scaffold4003: 129209-141586 Capsella grandiflora
Cagra.4003s0034 10.0kb upstream 10.0kb upstream 10000 false Scaffold4003: 129209-139208 Capsella grandiflora
Cagra.4003s0034 10.0kb downstream 10.0kb downstream 12378 true Scaffold4003: 139209-151586 Capsella grandiflora
Cagra.4003s0034 10.0kb downstream 10.0kb downstream 10000 false Scaffold4003: 141587-151586 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373061 5261 Brassicaceae View MSA
123839450 5264 Brassicales-Malvales View MSA
124340031 5266 SBM View MSA
124251215 5268 Malvidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain