Gene : Cagra.4003s0049 C. grandiflora v1.1
Defline:  (1 of 2) PTHR12565:SF137 - TRANSCRIPTION FACTOR BHLH79 Genomic Order:  49
Name:  ? Cagra.4003s0049 Secondary Identifier:  ? PAC:28894863
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4003s0049 0.5kb upstream 0.5kb upstream 2506 true Scaffold4003: 200187-202692 Capsella grandiflora
Cagra.4003s0049 0.5kb upstream 0.5kb upstream 500 false Scaffold4003: 202193-202692 Capsella grandiflora
Cagra.4003s0049 0.5kb downstream 0.5kb downstream 2506 true Scaffold4003: 199687-202192 Capsella grandiflora
Cagra.4003s0049 0.5kb downstream 0.5kb downstream 500 false Scaffold4003: 199687-200186 Capsella grandiflora
Cagra.4003s0049 1.0kb upstream 1.0kb upstream 3006 true Scaffold4003: 200187-203192 Capsella grandiflora
Cagra.4003s0049 1.0kb upstream 1.0kb upstream 1000 false Scaffold4003: 202193-203192 Capsella grandiflora
Cagra.4003s0049 1.0kb downstream 1.0kb downstream 3006 true Scaffold4003: 199187-202192 Capsella grandiflora
Cagra.4003s0049 1.0kb downstream 1.0kb downstream 1000 false Scaffold4003: 199187-200186 Capsella grandiflora
Cagra.4003s0049 2.0kb upstream 2.0kb upstream 4006 true Scaffold4003: 200187-204192 Capsella grandiflora
Cagra.4003s0049 2.0kb upstream 2.0kb upstream 2000 false Scaffold4003: 202193-204192 Capsella grandiflora
Cagra.4003s0049 2.0kb downstream 2.0kb downstream 4006 true Scaffold4003: 198187-202192 Capsella grandiflora
Cagra.4003s0049 2.0kb downstream 2.0kb downstream 2000 false Scaffold4003: 198187-200186 Capsella grandiflora
Cagra.4003s0049 5.0kb upstream 5.0kb upstream 7006 true Scaffold4003: 200187-207192 Capsella grandiflora
Cagra.4003s0049 5.0kb upstream 5.0kb upstream 5000 false Scaffold4003: 202193-207192 Capsella grandiflora
Cagra.4003s0049 5.0kb downstream 5.0kb downstream 7006 true Scaffold4003: 195187-202192 Capsella grandiflora
Cagra.4003s0049 5.0kb downstream 5.0kb downstream 5000 false Scaffold4003: 195187-200186 Capsella grandiflora
Cagra.4003s0049 10.0kb upstream 10.0kb upstream 12006 true Scaffold4003: 200187-212192 Capsella grandiflora
Cagra.4003s0049 10.0kb upstream 10.0kb upstream 10000 false Scaffold4003: 202193-212192 Capsella grandiflora
Cagra.4003s0049 10.0kb downstream 10.0kb downstream 12006 true Scaffold4003: 190187-202192 Capsella grandiflora
Cagra.4003s0049 10.0kb downstream 10.0kb downstream 10000 false Scaffold4003: 190187-200186 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363802 5261 Brassicaceae View MSA
123828130 5264 Brassicales-Malvales View MSA
124346515 5266 SBM View MSA
124240242 5268 Malvidae View MSA
124066126 5270 Rosid View MSA
123750840 5271 Pentapetalae View MSA
122787869 5272 Eudicot View MSA
122041891 5273 Angiosperm View MSA
121350038 5274 Embryophyte View MSA
123381551 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain