Gene : Cagra.4006s0007 C. grandiflora v1.1
Defline:  (1 of 3) PTHR11969:SF22 - TRANSCRIPTION FACTOR BHLH71-RELATED Genomic Order:  7
Name:  ? Cagra.4006s0007 Secondary Identifier:  ? PAC:28913376
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4006s0007 0.5kb upstream 0.5kb upstream 2841 true Scaffold4006: 22621-25461 Capsella grandiflora
Cagra.4006s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold4006: 24962-25461 Capsella grandiflora
Cagra.4006s0007 0.5kb downstream 0.5kb downstream 2841 true Scaffold4006: 22121-24961 Capsella grandiflora
Cagra.4006s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold4006: 22121-22620 Capsella grandiflora
Cagra.4006s0007 1.0kb upstream 1.0kb upstream 3341 true Scaffold4006: 22621-25961 Capsella grandiflora
Cagra.4006s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold4006: 24962-25961 Capsella grandiflora
Cagra.4006s0007 1.0kb downstream 1.0kb downstream 3341 true Scaffold4006: 21621-24961 Capsella grandiflora
Cagra.4006s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold4006: 21621-22620 Capsella grandiflora
Cagra.4006s0007 2.0kb upstream 2.0kb upstream 4341 true Scaffold4006: 22621-26961 Capsella grandiflora
Cagra.4006s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold4006: 24962-26961 Capsella grandiflora
Cagra.4006s0007 2.0kb downstream 2.0kb downstream 4341 true Scaffold4006: 20621-24961 Capsella grandiflora
Cagra.4006s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold4006: 20621-22620 Capsella grandiflora
Cagra.4006s0007 5.0kb upstream 5.0kb upstream 7341 true Scaffold4006: 22621-29961 Capsella grandiflora
Cagra.4006s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold4006: 24962-29961 Capsella grandiflora
Cagra.4006s0007 5.0kb downstream 5.0kb downstream 7341 true Scaffold4006: 17621-24961 Capsella grandiflora
Cagra.4006s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold4006: 17621-22620 Capsella grandiflora
Cagra.4006s0007 10.0kb upstream 10.0kb upstream 12341 true Scaffold4006: 22621-34961 Capsella grandiflora
Cagra.4006s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold4006: 24962-34961 Capsella grandiflora
Cagra.4006s0007 10.0kb downstream 10.0kb downstream 12341 true Scaffold4006: 12621-24961 Capsella grandiflora
Cagra.4006s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold4006: 12621-22620 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378406 5261 Brassicaceae View MSA
123836851 5264 Brassicales-Malvales View MSA
124345598 5266 SBM View MSA
124253153 5268 Malvidae View MSA
124070189 5270 Rosid View MSA
123749285 5271 Pentapetalae View MSA
122794835 5272 Eudicot View MSA
122051154 5273 Angiosperm View MSA
121350598 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain