Gene : Cagra.4006s0035 C. grandiflora v1.1
Defline:  (1 of 1) 2.6.1.9 - Histidinol-phosphate transaminase / Imidazolylacetolphosphate aminotransferase Genomic Order:  35
Name:  ? Cagra.4006s0035 Secondary Identifier:  ? PAC:28913381
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HISTSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4006s0035 0.5kb upstream 0.5kb upstream 2770 true Scaffold4006: 149698-152467 Capsella grandiflora
Cagra.4006s0035 0.5kb upstream 0.5kb upstream 500 false Scaffold4006: 151968-152467 Capsella grandiflora
Cagra.4006s0035 0.5kb downstream 0.5kb downstream 2770 true Scaffold4006: 149198-151967 Capsella grandiflora
Cagra.4006s0035 0.5kb downstream 0.5kb downstream 500 false Scaffold4006: 149198-149697 Capsella grandiflora
Cagra.4006s0035 1.0kb upstream 1.0kb upstream 3270 true Scaffold4006: 149698-152967 Capsella grandiflora
Cagra.4006s0035 1.0kb upstream 1.0kb upstream 1000 false Scaffold4006: 151968-152967 Capsella grandiflora
Cagra.4006s0035 1.0kb downstream 1.0kb downstream 3270 true Scaffold4006: 148698-151967 Capsella grandiflora
Cagra.4006s0035 1.0kb downstream 1.0kb downstream 1000 false Scaffold4006: 148698-149697 Capsella grandiflora
Cagra.4006s0035 2.0kb upstream 2.0kb upstream 4270 true Scaffold4006: 149698-153967 Capsella grandiflora
Cagra.4006s0035 2.0kb upstream 2.0kb upstream 2000 false Scaffold4006: 151968-153967 Capsella grandiflora
Cagra.4006s0035 2.0kb downstream 2.0kb downstream 4270 true Scaffold4006: 147698-151967 Capsella grandiflora
Cagra.4006s0035 2.0kb downstream 2.0kb downstream 2000 false Scaffold4006: 147698-149697 Capsella grandiflora
Cagra.4006s0035 5.0kb upstream 5.0kb upstream 7270 true Scaffold4006: 149698-156967 Capsella grandiflora
Cagra.4006s0035 5.0kb upstream 5.0kb upstream 5000 false Scaffold4006: 151968-156967 Capsella grandiflora
Cagra.4006s0035 5.0kb downstream 5.0kb downstream 7270 true Scaffold4006: 144698-151967 Capsella grandiflora
Cagra.4006s0035 5.0kb downstream 5.0kb downstream 5000 false Scaffold4006: 144698-149697 Capsella grandiflora
Cagra.4006s0035 10.0kb upstream 10.0kb upstream 12270 true Scaffold4006: 149698-161967 Capsella grandiflora
Cagra.4006s0035 10.0kb upstream 10.0kb upstream 10000 false Scaffold4006: 151968-161967 Capsella grandiflora
Cagra.4006s0035 10.0kb downstream 10.0kb downstream 12270 true Scaffold4006: 139698-151967 Capsella grandiflora
Cagra.4006s0035 10.0kb downstream 10.0kb downstream 10000 false Scaffold4006: 139698-149697 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375431 5261 Brassicaceae View MSA
123827771 5264 Brassicales-Malvales View MSA
124346298 5266 SBM View MSA
124251034 5268 Malvidae View MSA
124062361 5270 Rosid View MSA
123738410 5271 Pentapetalae View MSA
122789923 5272 Eudicot View MSA
122043706 5273 Angiosperm View MSA
121344225 5274 Embryophyte View MSA
123423969 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain