Gene : Cagra.3957s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR35695:SF1 - GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, CHLOROPLASTIC Genomic Order:  1
Name:  ? Cagra.3957s0001 Secondary Identifier:  ? PAC:28914792
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY0-1319 Capsella grandiflora pathologic  
Cgrandiflora PWY4FS-7 Capsella grandiflora pathologic  
Cgrandiflora PWY-7411 Capsella grandiflora pathologic  
Cgrandiflora TRIGLSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3957s0001 0.5kb upstream 0.5kb upstream 3871 true Scaffold3957: 5045-8915 Capsella grandiflora
Cagra.3957s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold3957: 8416-8915 Capsella grandiflora
Cagra.3957s0001 0.5kb downstream 0.5kb downstream 3871 true Scaffold3957: 4545-8415 Capsella grandiflora
Cagra.3957s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold3957: 4545-5044 Capsella grandiflora
Cagra.3957s0001 1.0kb upstream 1.0kb upstream 4371 true Scaffold3957: 5045-9415 Capsella grandiflora
Cagra.3957s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold3957: 8416-9415 Capsella grandiflora
Cagra.3957s0001 1.0kb downstream 1.0kb downstream 4371 true Scaffold3957: 4045-8415 Capsella grandiflora
Cagra.3957s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold3957: 4045-5044 Capsella grandiflora
Cagra.3957s0001 2.0kb upstream 2.0kb upstream 5371 true Scaffold3957: 5045-10415 Capsella grandiflora
Cagra.3957s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold3957: 8416-10415 Capsella grandiflora
Cagra.3957s0001 2.0kb downstream 2.0kb downstream 5371 true Scaffold3957: 3045-8415 Capsella grandiflora
Cagra.3957s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold3957: 3045-5044 Capsella grandiflora
Cagra.3957s0001 5.0kb upstream 5.0kb upstream 8371 true Scaffold3957: 5045-13415 Capsella grandiflora
Cagra.3957s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold3957: 8416-13415 Capsella grandiflora
Cagra.3957s0001 5.0kb downstream 5.0kb downstream 8371 true Scaffold3957: 45-8415 Capsella grandiflora
Cagra.3957s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold3957: 45-5044 Capsella grandiflora
Cagra.3957s0001 10.0kb upstream 10.0kb upstream 13371 true Scaffold3957: 5045-18415 Capsella grandiflora
Cagra.3957s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold3957: 8416-18415 Capsella grandiflora
Cagra.3957s0001 10.0kb downstream 10.0kb downstream 8415 true Scaffold3957: 1-8415 Capsella grandiflora
Cagra.3957s0001 10.0kb downstream 10.0kb downstream 5044 false Scaffold3957: 1-5044 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360786 5261 Brassicaceae View MSA
123840834 5264 Brassicales-Malvales View MSA
124339399 5266 SBM View MSA
124237603 5268 Malvidae View MSA
124061873 5270 Rosid View MSA
123741043 5271 Pentapetalae View MSA
122789862 5272 Eudicot View MSA
122046647 5273 Angiosperm View MSA
121346869 5274 Embryophyte View MSA
123424445 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain