Gene : Cagra.3954s0037 C. grandiflora v1.1
Defline:  (1 of 1) KOG2368 - Hydroxymethylglutaryl-CoA lyase Genomic Order:  37
Name:  ? Cagra.3954s0037 Secondary Identifier:  ? PAC:28903027
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora BRANCHED-CHAIN-AA-SYN-PWY Capsella grandiflora pathologic  
Cgrandiflora LEUSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3954s0037 0.5kb upstream 0.5kb upstream 9954 true Scaffold3954: 164579-174532 Capsella grandiflora
Cagra.3954s0037 0.5kb upstream 0.5kb upstream 500 false Scaffold3954: 164579-165078 Capsella grandiflora
Cagra.3954s0037 0.5kb downstream 0.5kb downstream 9557 true Scaffold3954: 165079-174635 Capsella grandiflora
Cagra.3954s0037 0.5kb downstream 0.5kb downstream 103 false Scaffold3954: 174533-174635 Capsella grandiflora
Cagra.3954s0037 1.0kb upstream 1.0kb upstream 10454 true Scaffold3954: 164079-174532 Capsella grandiflora
Cagra.3954s0037 1.0kb upstream 1.0kb upstream 1000 false Scaffold3954: 164079-165078 Capsella grandiflora
Cagra.3954s0037 1.0kb downstream 1.0kb downstream 9557 true Scaffold3954: 165079-174635 Capsella grandiflora
Cagra.3954s0037 1.0kb downstream 1.0kb downstream 103 false Scaffold3954: 174533-174635 Capsella grandiflora
Cagra.3954s0037 2.0kb upstream 2.0kb upstream 11454 true Scaffold3954: 163079-174532 Capsella grandiflora
Cagra.3954s0037 2.0kb upstream 2.0kb upstream 2000 false Scaffold3954: 163079-165078 Capsella grandiflora
Cagra.3954s0037 2.0kb downstream 2.0kb downstream 9557 true Scaffold3954: 165079-174635 Capsella grandiflora
Cagra.3954s0037 2.0kb downstream 2.0kb downstream 103 false Scaffold3954: 174533-174635 Capsella grandiflora
Cagra.3954s0037 5.0kb upstream 5.0kb upstream 14454 true Scaffold3954: 160079-174532 Capsella grandiflora
Cagra.3954s0037 5.0kb upstream 5.0kb upstream 5000 false Scaffold3954: 160079-165078 Capsella grandiflora
Cagra.3954s0037 5.0kb downstream 5.0kb downstream 9557 true Scaffold3954: 165079-174635 Capsella grandiflora
Cagra.3954s0037 5.0kb downstream 5.0kb downstream 103 false Scaffold3954: 174533-174635 Capsella grandiflora
Cagra.3954s0037 10.0kb upstream 10.0kb upstream 19454 true Scaffold3954: 155079-174532 Capsella grandiflora
Cagra.3954s0037 10.0kb upstream 10.0kb upstream 10000 false Scaffold3954: 155079-165078 Capsella grandiflora
Cagra.3954s0037 10.0kb downstream 10.0kb downstream 9557 true Scaffold3954: 165079-174635 Capsella grandiflora
Cagra.3954s0037 10.0kb downstream 10.0kb downstream 103 false Scaffold3954: 174533-174635 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122382034 5261 Brassicaceae View MSA
123803618 5264 Brassicales-Malvales View MSA
124300712 5266 SBM View MSA
124151835 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain