Gene : Cagra.3822s0003 C. grandiflora v1.1
Defline:  (1 of 1) 1.14.13.122 - Chlorophyllide-a oxygenase / Cholorophyll-b synthase Genomic Order:  3
Name:  ? Cagra.3822s0003 Secondary Identifier:  ? PAC:28896018
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5068 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3822s0003 0.5kb upstream 0.5kb upstream 2596 true Scaffold3822: 6371-8966 Capsella grandiflora
Cagra.3822s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold3822: 8467-8966 Capsella grandiflora
Cagra.3822s0003 0.5kb downstream 0.5kb downstream 2596 true Scaffold3822: 5871-8466 Capsella grandiflora
Cagra.3822s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold3822: 5871-6370 Capsella grandiflora
Cagra.3822s0003 1.0kb upstream 1.0kb upstream 3096 true Scaffold3822: 6371-9466 Capsella grandiflora
Cagra.3822s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold3822: 8467-9466 Capsella grandiflora
Cagra.3822s0003 1.0kb downstream 1.0kb downstream 3096 true Scaffold3822: 5371-8466 Capsella grandiflora
Cagra.3822s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold3822: 5371-6370 Capsella grandiflora
Cagra.3822s0003 2.0kb upstream 2.0kb upstream 4096 true Scaffold3822: 6371-10466 Capsella grandiflora
Cagra.3822s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold3822: 8467-10466 Capsella grandiflora
Cagra.3822s0003 2.0kb downstream 2.0kb downstream 4096 true Scaffold3822: 4371-8466 Capsella grandiflora
Cagra.3822s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold3822: 4371-6370 Capsella grandiflora
Cagra.3822s0003 5.0kb upstream 5.0kb upstream 6756 true Scaffold3822: 6371-13126 Capsella grandiflora
Cagra.3822s0003 5.0kb upstream 5.0kb upstream 4660 false Scaffold3822: 8467-13126 Capsella grandiflora
Cagra.3822s0003 5.0kb downstream 5.0kb downstream 7096 true Scaffold3822: 1371-8466 Capsella grandiflora
Cagra.3822s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold3822: 1371-6370 Capsella grandiflora
Cagra.3822s0003 10.0kb upstream 10.0kb upstream 6756 true Scaffold3822: 6371-13126 Capsella grandiflora
Cagra.3822s0003 10.0kb upstream 10.0kb upstream 4660 false Scaffold3822: 8467-13126 Capsella grandiflora
Cagra.3822s0003 10.0kb downstream 10.0kb downstream 8466 true Scaffold3822: 1-8466 Capsella grandiflora
Cagra.3822s0003 10.0kb downstream 10.0kb downstream 6370 false Scaffold3822: 1-6370 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361363 5261 Brassicaceae View MSA
123838199 5264 Brassicales-Malvales View MSA
124342247 5266 SBM View MSA
124242720 5268 Malvidae View MSA
124067782 5270 Rosid View MSA
123744269 5271 Pentapetalae View MSA
122787506 5272 Eudicot View MSA
122048070 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121348979 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain