Gene : Cagra.3834s0015 C. grandiflora v1.1
Defline:  (1 of 46) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  15
Name:  ? Cagra.3834s0015 Secondary Identifier:  ? PAC:28903908
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3834s0015 0.5kb upstream 0.5kb upstream 2916 true Scaffold3834: 72466-75381 Capsella grandiflora
Cagra.3834s0015 0.5kb upstream 0.5kb upstream 500 false Scaffold3834: 74882-75381 Capsella grandiflora
Cagra.3834s0015 0.5kb downstream 0.5kb downstream 2916 true Scaffold3834: 71966-74881 Capsella grandiflora
Cagra.3834s0015 0.5kb downstream 0.5kb downstream 500 false Scaffold3834: 71966-72465 Capsella grandiflora
Cagra.3834s0015 1.0kb upstream 1.0kb upstream 3416 true Scaffold3834: 72466-75881 Capsella grandiflora
Cagra.3834s0015 1.0kb upstream 1.0kb upstream 1000 false Scaffold3834: 74882-75881 Capsella grandiflora
Cagra.3834s0015 1.0kb downstream 1.0kb downstream 3416 true Scaffold3834: 71466-74881 Capsella grandiflora
Cagra.3834s0015 1.0kb downstream 1.0kb downstream 1000 false Scaffold3834: 71466-72465 Capsella grandiflora
Cagra.3834s0015 2.0kb upstream 2.0kb upstream 4416 true Scaffold3834: 72466-76881 Capsella grandiflora
Cagra.3834s0015 2.0kb upstream 2.0kb upstream 2000 false Scaffold3834: 74882-76881 Capsella grandiflora
Cagra.3834s0015 2.0kb downstream 2.0kb downstream 4416 true Scaffold3834: 70466-74881 Capsella grandiflora
Cagra.3834s0015 2.0kb downstream 2.0kb downstream 2000 false Scaffold3834: 70466-72465 Capsella grandiflora
Cagra.3834s0015 5.0kb upstream 5.0kb upstream 6345 true Scaffold3834: 72466-78810 Capsella grandiflora
Cagra.3834s0015 5.0kb upstream 5.0kb upstream 3929 false Scaffold3834: 74882-78810 Capsella grandiflora
Cagra.3834s0015 5.0kb downstream 5.0kb downstream 7416 true Scaffold3834: 67466-74881 Capsella grandiflora
Cagra.3834s0015 5.0kb downstream 5.0kb downstream 5000 false Scaffold3834: 67466-72465 Capsella grandiflora
Cagra.3834s0015 10.0kb upstream 10.0kb upstream 6345 true Scaffold3834: 72466-78810 Capsella grandiflora
Cagra.3834s0015 10.0kb upstream 10.0kb upstream 3929 false Scaffold3834: 74882-78810 Capsella grandiflora
Cagra.3834s0015 10.0kb downstream 10.0kb downstream 12416 true Scaffold3834: 62466-74881 Capsella grandiflora
Cagra.3834s0015 10.0kb downstream 10.0kb downstream 10000 false Scaffold3834: 62466-72465 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375088 5261 Brassicaceae View MSA
123841126 5264 Brassicales-Malvales View MSA
124345334 5266 SBM View MSA
124254286 5268 Malvidae View MSA
124062237 5270 Rosid View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain