Gene : Cagra.3782s0027 C. grandiflora v1.1
Defline:  (1 of 2) 2.7.1.138 - Ceramide kinase / Acylsphingosine kinase Genomic Order:  27
Name:  ? Cagra.3782s0027 Secondary Identifier:  ? PAC:28902692
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5129 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3782s0027 0.5kb upstream 0.5kb upstream 4699 true Scaffold3782: 96446-101144 Capsella grandiflora
Cagra.3782s0027 0.5kb upstream 0.5kb upstream 500 false Scaffold3782: 96446-96945 Capsella grandiflora
Cagra.3782s0027 0.5kb downstream 0.5kb downstream 4699 true Scaffold3782: 96946-101644 Capsella grandiflora
Cagra.3782s0027 0.5kb downstream 0.5kb downstream 500 false Scaffold3782: 101145-101644 Capsella grandiflora
Cagra.3782s0027 1.0kb upstream 1.0kb upstream 5199 true Scaffold3782: 95946-101144 Capsella grandiflora
Cagra.3782s0027 1.0kb upstream 1.0kb upstream 1000 false Scaffold3782: 95946-96945 Capsella grandiflora
Cagra.3782s0027 1.0kb downstream 1.0kb downstream 5199 true Scaffold3782: 96946-102144 Capsella grandiflora
Cagra.3782s0027 1.0kb downstream 1.0kb downstream 1000 false Scaffold3782: 101145-102144 Capsella grandiflora
Cagra.3782s0027 2.0kb upstream 2.0kb upstream 6199 true Scaffold3782: 94946-101144 Capsella grandiflora
Cagra.3782s0027 2.0kb upstream 2.0kb upstream 2000 false Scaffold3782: 94946-96945 Capsella grandiflora
Cagra.3782s0027 2.0kb downstream 2.0kb downstream 6199 true Scaffold3782: 96946-103144 Capsella grandiflora
Cagra.3782s0027 2.0kb downstream 2.0kb downstream 2000 false Scaffold3782: 101145-103144 Capsella grandiflora
Cagra.3782s0027 5.0kb upstream 5.0kb upstream 9199 true Scaffold3782: 91946-101144 Capsella grandiflora
Cagra.3782s0027 5.0kb upstream 5.0kb upstream 5000 false Scaffold3782: 91946-96945 Capsella grandiflora
Cagra.3782s0027 5.0kb downstream 5.0kb downstream 9199 true Scaffold3782: 96946-106144 Capsella grandiflora
Cagra.3782s0027 5.0kb downstream 5.0kb downstream 5000 false Scaffold3782: 101145-106144 Capsella grandiflora
Cagra.3782s0027 10.0kb upstream 10.0kb upstream 14199 true Scaffold3782: 86946-101144 Capsella grandiflora
Cagra.3782s0027 10.0kb upstream 10.0kb upstream 10000 false Scaffold3782: 86946-96945 Capsella grandiflora
Cagra.3782s0027 10.0kb downstream 10.0kb downstream 14199 true Scaffold3782: 96946-111144 Capsella grandiflora
Cagra.3782s0027 10.0kb downstream 10.0kb downstream 10000 false Scaffold3782: 101145-111144 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365978 5261 Brassicaceae View MSA
123830936 5264 Brassicales-Malvales View MSA
124346384 5266 SBM View MSA
124251685 5268 Malvidae View MSA
124066629 5270 Rosid View MSA
123746434 5271 Pentapetalae View MSA
122791324 5272 Eudicot View MSA
122045057 5273 Angiosperm View MSA
121345163 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain