Gene : Cagra.3793s0011 C. grandiflora v1.1
Defline:  (1 of 46) KOG1987 - Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains Genomic Order:  11
Name:  ? Cagra.3793s0011 Secondary Identifier:  ? PAC:28911180
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3793s0011 0.5kb upstream 0.5kb upstream 3093 true Scaffold3793: 34394-37486 Capsella grandiflora
Cagra.3793s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold3793: 34394-34893 Capsella grandiflora
Cagra.3793s0011 0.5kb downstream 0.5kb downstream 3093 true Scaffold3793: 34894-37986 Capsella grandiflora
Cagra.3793s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold3793: 37487-37986 Capsella grandiflora
Cagra.3793s0011 1.0kb upstream 1.0kb upstream 3593 true Scaffold3793: 33894-37486 Capsella grandiflora
Cagra.3793s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold3793: 33894-34893 Capsella grandiflora
Cagra.3793s0011 1.0kb downstream 1.0kb downstream 3593 true Scaffold3793: 34894-38486 Capsella grandiflora
Cagra.3793s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold3793: 37487-38486 Capsella grandiflora
Cagra.3793s0011 2.0kb upstream 2.0kb upstream 4593 true Scaffold3793: 32894-37486 Capsella grandiflora
Cagra.3793s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold3793: 32894-34893 Capsella grandiflora
Cagra.3793s0011 2.0kb downstream 2.0kb downstream 4593 true Scaffold3793: 34894-39486 Capsella grandiflora
Cagra.3793s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold3793: 37487-39486 Capsella grandiflora
Cagra.3793s0011 5.0kb upstream 5.0kb upstream 7593 true Scaffold3793: 29894-37486 Capsella grandiflora
Cagra.3793s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold3793: 29894-34893 Capsella grandiflora
Cagra.3793s0011 5.0kb downstream 5.0kb downstream 7593 true Scaffold3793: 34894-42486 Capsella grandiflora
Cagra.3793s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold3793: 37487-42486 Capsella grandiflora
Cagra.3793s0011 10.0kb upstream 10.0kb upstream 12593 true Scaffold3793: 24894-37486 Capsella grandiflora
Cagra.3793s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold3793: 24894-34893 Capsella grandiflora
Cagra.3793s0011 10.0kb downstream 10.0kb downstream 12593 true Scaffold3793: 34894-47486 Capsella grandiflora
Cagra.3793s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold3793: 37487-47486 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040960 5273 Angiosperm View MSA
122378828 5261 Brassicaceae View MSA
123839948 5264 Brassicales-Malvales View MSA
124347827 5266 SBM View MSA
124244421 5268 Malvidae View MSA
124064148 5270 Rosid View MSA
123743633 5271 Pentapetalae View MSA
122791318 5272 Eudicot View MSA
121348457 5274 Embryophyte View MSA
123428082 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain