Gene : Cagra.4456s0006 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10491 - DTDP-4-DEHYDRORHAMNOSE REDUCTASE Genomic Order:  6
Name:  ? Cagra.4456s0006 Secondary Identifier:  ? PAC:28903578
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ETHYL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5041 Capsella grandiflora pathologic  
Cgrandiflora PWY-7270 Capsella grandiflora pathologic  
Cgrandiflora PWY-7528 Capsella grandiflora pathologic  
Cgrandiflora SAM-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4456s0006 0.5kb upstream 0.5kb upstream 2181 true Scaffold4456: 26978-29158 Capsella grandiflora
Cagra.4456s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold4456: 26978-27477 Capsella grandiflora
Cagra.4456s0006 0.5kb downstream 0.5kb downstream 2181 true Scaffold4456: 27478-29658 Capsella grandiflora
Cagra.4456s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold4456: 29159-29658 Capsella grandiflora
Cagra.4456s0006 1.0kb upstream 1.0kb upstream 2681 true Scaffold4456: 26478-29158 Capsella grandiflora
Cagra.4456s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold4456: 26478-27477 Capsella grandiflora
Cagra.4456s0006 1.0kb downstream 1.0kb downstream 2681 true Scaffold4456: 27478-30158 Capsella grandiflora
Cagra.4456s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold4456: 29159-30158 Capsella grandiflora
Cagra.4456s0006 2.0kb upstream 2.0kb upstream 3681 true Scaffold4456: 25478-29158 Capsella grandiflora
Cagra.4456s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold4456: 25478-27477 Capsella grandiflora
Cagra.4456s0006 2.0kb downstream 2.0kb downstream 3681 true Scaffold4456: 27478-31158 Capsella grandiflora
Cagra.4456s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold4456: 29159-31158 Capsella grandiflora
Cagra.4456s0006 5.0kb upstream 5.0kb upstream 6681 true Scaffold4456: 22478-29158 Capsella grandiflora
Cagra.4456s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold4456: 22478-27477 Capsella grandiflora
Cagra.4456s0006 5.0kb downstream 5.0kb downstream 6681 true Scaffold4456: 27478-34158 Capsella grandiflora
Cagra.4456s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold4456: 29159-34158 Capsella grandiflora
Cagra.4456s0006 10.0kb upstream 10.0kb upstream 11681 true Scaffold4456: 17478-29158 Capsella grandiflora
Cagra.4456s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold4456: 17478-27477 Capsella grandiflora
Cagra.4456s0006 10.0kb downstream 10.0kb downstream 11681 true Scaffold4456: 27478-39158 Capsella grandiflora
Cagra.4456s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold4456: 29159-39158 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373265 5261 Brassicaceae View MSA
123833363 5264 Brassicales-Malvales View MSA
124345444 5266 SBM View MSA
124242488 5268 Malvidae View MSA
124068376 5270 Rosid View MSA
123738972 5271 Pentapetalae View MSA
122787583 5272 Eudicot View MSA
122046148 5273 Angiosperm View MSA
121346812 5274 Embryophyte View MSA
123424817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain