Gene : Cagra.4538s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12428:SF19 - INNER MEMBRANE PROTEIN ALBINO3, CHLOROPLASTIC Genomic Order:  4
Name:  ? Cagra.4538s0004 Secondary Identifier:  ? PAC:28913087
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4538s0004 0.5kb upstream 0.5kb upstream 3308 true Scaffold4538: 12985-16292 Capsella grandiflora
Cagra.4538s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold4538: 12985-13484 Capsella grandiflora
Cagra.4538s0004 0.5kb downstream 0.5kb downstream 3308 true Scaffold4538: 13485-16792 Capsella grandiflora
Cagra.4538s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold4538: 16293-16792 Capsella grandiflora
Cagra.4538s0004 1.0kb upstream 1.0kb upstream 3808 true Scaffold4538: 12485-16292 Capsella grandiflora
Cagra.4538s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold4538: 12485-13484 Capsella grandiflora
Cagra.4538s0004 1.0kb downstream 1.0kb downstream 3808 true Scaffold4538: 13485-17292 Capsella grandiflora
Cagra.4538s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold4538: 16293-17292 Capsella grandiflora
Cagra.4538s0004 2.0kb upstream 2.0kb upstream 4808 true Scaffold4538: 11485-16292 Capsella grandiflora
Cagra.4538s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold4538: 11485-13484 Capsella grandiflora
Cagra.4538s0004 2.0kb downstream 2.0kb downstream 4808 true Scaffold4538: 13485-18292 Capsella grandiflora
Cagra.4538s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold4538: 16293-18292 Capsella grandiflora
Cagra.4538s0004 5.0kb upstream 5.0kb upstream 7808 true Scaffold4538: 8485-16292 Capsella grandiflora
Cagra.4538s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold4538: 8485-13484 Capsella grandiflora
Cagra.4538s0004 5.0kb downstream 5.0kb downstream 7808 true Scaffold4538: 13485-21292 Capsella grandiflora
Cagra.4538s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold4538: 16293-21292 Capsella grandiflora
Cagra.4538s0004 10.0kb upstream 10.0kb upstream 12808 true Scaffold4538: 3485-16292 Capsella grandiflora
Cagra.4538s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold4538: 3485-13484 Capsella grandiflora
Cagra.4538s0004 10.0kb downstream 10.0kb downstream 12808 true Scaffold4538: 13485-26292 Capsella grandiflora
Cagra.4538s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold4538: 16293-26292 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363892 5261 Brassicaceae View MSA
123832520 5264 Brassicales-Malvales View MSA
124346396 5266 SBM View MSA
124243172 5268 Malvidae View MSA
124062830 5270 Rosid View MSA
123743978 5271 Pentapetalae View MSA
122791056 5272 Eudicot View MSA
122045068 5273 Angiosperm View MSA
121347702 5274 Embryophyte View MSA
123428331 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain