Gene : Cagra.4396s0050 C. grandiflora v1.1
Defline:  (1 of 11) PTHR11802:SF29 - SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED Genomic Order:  50
Name:  ? Cagra.4396s0050 Secondary Identifier:  ? PAC:28918063
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3301 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4396s0050 0.5kb upstream 0.5kb upstream 2992 true Scaffold4396: 176229-179220 Capsella grandiflora
Cagra.4396s0050 0.5kb upstream 0.5kb upstream 500 false Scaffold4396: 176229-176728 Capsella grandiflora
Cagra.4396s0050 0.5kb downstream 0.5kb downstream 2992 true Scaffold4396: 176729-179720 Capsella grandiflora
Cagra.4396s0050 0.5kb downstream 0.5kb downstream 500 false Scaffold4396: 179221-179720 Capsella grandiflora
Cagra.4396s0050 1.0kb upstream 1.0kb upstream 3492 true Scaffold4396: 175729-179220 Capsella grandiflora
Cagra.4396s0050 1.0kb upstream 1.0kb upstream 1000 false Scaffold4396: 175729-176728 Capsella grandiflora
Cagra.4396s0050 1.0kb downstream 1.0kb downstream 3492 true Scaffold4396: 176729-180220 Capsella grandiflora
Cagra.4396s0050 1.0kb downstream 1.0kb downstream 1000 false Scaffold4396: 179221-180220 Capsella grandiflora
Cagra.4396s0050 2.0kb upstream 2.0kb upstream 4492 true Scaffold4396: 174729-179220 Capsella grandiflora
Cagra.4396s0050 2.0kb upstream 2.0kb upstream 2000 false Scaffold4396: 174729-176728 Capsella grandiflora
Cagra.4396s0050 2.0kb downstream 2.0kb downstream 4492 true Scaffold4396: 176729-181220 Capsella grandiflora
Cagra.4396s0050 2.0kb downstream 2.0kb downstream 2000 false Scaffold4396: 179221-181220 Capsella grandiflora
Cagra.4396s0050 5.0kb upstream 5.0kb upstream 7492 true Scaffold4396: 171729-179220 Capsella grandiflora
Cagra.4396s0050 5.0kb upstream 5.0kb upstream 5000 false Scaffold4396: 171729-176728 Capsella grandiflora
Cagra.4396s0050 5.0kb downstream 5.0kb downstream 7492 true Scaffold4396: 176729-184220 Capsella grandiflora
Cagra.4396s0050 5.0kb downstream 5.0kb downstream 5000 false Scaffold4396: 179221-184220 Capsella grandiflora
Cagra.4396s0050 10.0kb upstream 10.0kb upstream 12492 true Scaffold4396: 166729-179220 Capsella grandiflora
Cagra.4396s0050 10.0kb upstream 10.0kb upstream 10000 false Scaffold4396: 166729-176728 Capsella grandiflora
Cagra.4396s0050 10.0kb downstream 10.0kb downstream 12492 true Scaffold4396: 176729-189220 Capsella grandiflora
Cagra.4396s0050 10.0kb downstream 10.0kb downstream 10000 false Scaffold4396: 179221-189220 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366826 5261 Brassicaceae View MSA
123799251 5264 Brassicales-Malvales View MSA
124296796 5266 SBM View MSA
124254219 5268 Malvidae View MSA
124073941 5270 Rosid View MSA
123747460 5271 Pentapetalae View MSA
122796815 5272 Eudicot View MSA
122050629 5273 Angiosperm View MSA
121312037 5274 Embryophyte View MSA
123349249 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain