Gene : Cagra.4399s0003 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10457:SF4 - MEVALONATE KINASE Genomic Order:  3
Name:  ? Cagra.4399s0003 Secondary Identifier:  ? PAC:28901975
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5910 Capsella grandiflora pathologic  
Cgrandiflora PWY-922 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4399s0003 0.5kb upstream 0.5kb upstream 1946 true Scaffold4399: 3923-5868 Capsella grandiflora
Cagra.4399s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold4399: 3923-4422 Capsella grandiflora
Cagra.4399s0003 0.5kb downstream 0.5kb downstream 1946 true Scaffold4399: 4423-6368 Capsella grandiflora
Cagra.4399s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold4399: 5869-6368 Capsella grandiflora
Cagra.4399s0003 1.0kb upstream 1.0kb upstream 2446 true Scaffold4399: 3423-5868 Capsella grandiflora
Cagra.4399s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold4399: 3423-4422 Capsella grandiflora
Cagra.4399s0003 1.0kb downstream 1.0kb downstream 2446 true Scaffold4399: 4423-6868 Capsella grandiflora
Cagra.4399s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold4399: 5869-6868 Capsella grandiflora
Cagra.4399s0003 2.0kb upstream 2.0kb upstream 3446 true Scaffold4399: 2423-5868 Capsella grandiflora
Cagra.4399s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold4399: 2423-4422 Capsella grandiflora
Cagra.4399s0003 2.0kb downstream 2.0kb downstream 3446 true Scaffold4399: 4423-7868 Capsella grandiflora
Cagra.4399s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold4399: 5869-7868 Capsella grandiflora
Cagra.4399s0003 5.0kb upstream 5.0kb upstream 5868 true Scaffold4399: 1-5868 Capsella grandiflora
Cagra.4399s0003 5.0kb upstream 5.0kb upstream 4422 false Scaffold4399: 1-4422 Capsella grandiflora
Cagra.4399s0003 5.0kb downstream 5.0kb downstream 6446 true Scaffold4399: 4423-10868 Capsella grandiflora
Cagra.4399s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold4399: 5869-10868 Capsella grandiflora
Cagra.4399s0003 10.0kb upstream 10.0kb upstream 5868 true Scaffold4399: 1-5868 Capsella grandiflora
Cagra.4399s0003 10.0kb upstream 10.0kb upstream 4422 false Scaffold4399: 1-4422 Capsella grandiflora
Cagra.4399s0003 10.0kb downstream 10.0kb downstream 11446 true Scaffold4399: 4423-15868 Capsella grandiflora
Cagra.4399s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold4399: 5869-15868 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041242 5273 Angiosperm View MSA
122366195 5261 Brassicaceae View MSA
123840116 5264 Brassicales-Malvales View MSA
124346036 5266 SBM View MSA
124238701 5268 Malvidae View MSA
124063522 5270 Rosid View MSA
123737750 5271 Pentapetalae View MSA
122787384 5272 Eudicot View MSA
121345229 5274 Embryophyte View MSA
123380177 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain