Gene : Cagra.4408s0001 C. grandiflora v1.1
Defline:  (1 of 132) PF00847 - AP2 domain (AP2) Genomic Order:  1
Name:  ? Cagra.4408s0001 Secondary Identifier:  ? PAC:28908293
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4408s0001 0.5kb upstream 0.5kb upstream 488 true Scaffold4408: 1-488 Capsella grandiflora
Cagra.4408s0001 0.5kb upstream 0.5kb upstream 10 false Scaffold4408: 1-10 Capsella grandiflora
Cagra.4408s0001 0.5kb downstream 0.5kb downstream 978 true Scaffold4408: 11-988 Capsella grandiflora
Cagra.4408s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold4408: 489-988 Capsella grandiflora
Cagra.4408s0001 1.0kb upstream 1.0kb upstream 488 true Scaffold4408: 1-488 Capsella grandiflora
Cagra.4408s0001 1.0kb upstream 1.0kb upstream 10 false Scaffold4408: 1-10 Capsella grandiflora
Cagra.4408s0001 1.0kb downstream 1.0kb downstream 1478 true Scaffold4408: 11-1488 Capsella grandiflora
Cagra.4408s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold4408: 489-1488 Capsella grandiflora
Cagra.4408s0001 2.0kb upstream 2.0kb upstream 488 true Scaffold4408: 1-488 Capsella grandiflora
Cagra.4408s0001 2.0kb upstream 2.0kb upstream 10 false Scaffold4408: 1-10 Capsella grandiflora
Cagra.4408s0001 2.0kb downstream 2.0kb downstream 2478 true Scaffold4408: 11-2488 Capsella grandiflora
Cagra.4408s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold4408: 489-2488 Capsella grandiflora
Cagra.4408s0001 5.0kb upstream 5.0kb upstream 488 true Scaffold4408: 1-488 Capsella grandiflora
Cagra.4408s0001 5.0kb upstream 5.0kb upstream 10 false Scaffold4408: 1-10 Capsella grandiflora
Cagra.4408s0001 5.0kb downstream 5.0kb downstream 5478 true Scaffold4408: 11-5488 Capsella grandiflora
Cagra.4408s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold4408: 489-5488 Capsella grandiflora
Cagra.4408s0001 10.0kb upstream 10.0kb upstream 488 true Scaffold4408: 1-488 Capsella grandiflora
Cagra.4408s0001 10.0kb upstream 10.0kb upstream 10 false Scaffold4408: 1-10 Capsella grandiflora
Cagra.4408s0001 10.0kb downstream 10.0kb downstream 10478 true Scaffold4408: 11-10488 Capsella grandiflora
Cagra.4408s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold4408: 489-10488 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366884 5261 Brassicaceae View MSA
123833759 5264 Brassicales-Malvales View MSA
124336534 5266 SBM View MSA
124252579 5268 Malvidae View MSA
124073354 5270 Rosid View MSA
123741897 5271 Pentapetalae View MSA
122793297 5272 Eudicot View MSA
122049485 5273 Angiosperm View MSA
121351578 5274 Embryophyte View MSA
123382234 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain