Gene : Cagra.4326s0003 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11946:SF86 - METHIONINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  3
Name:  ? Cagra.4326s0003 Secondary Identifier:  ? PAC:28906076
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4326s0003 0.5kb upstream 0.5kb upstream 6127 true Scaffold4326: 5284-11410 Capsella grandiflora
Cagra.4326s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold4326: 5284-5783 Capsella grandiflora
Cagra.4326s0003 0.5kb downstream 0.5kb downstream 6127 true Scaffold4326: 5784-11910 Capsella grandiflora
Cagra.4326s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold4326: 11411-11910 Capsella grandiflora
Cagra.4326s0003 1.0kb upstream 1.0kb upstream 6627 true Scaffold4326: 4784-11410 Capsella grandiflora
Cagra.4326s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold4326: 4784-5783 Capsella grandiflora
Cagra.4326s0003 1.0kb downstream 1.0kb downstream 6627 true Scaffold4326: 5784-12410 Capsella grandiflora
Cagra.4326s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold4326: 11411-12410 Capsella grandiflora
Cagra.4326s0003 2.0kb upstream 2.0kb upstream 7627 true Scaffold4326: 3784-11410 Capsella grandiflora
Cagra.4326s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold4326: 3784-5783 Capsella grandiflora
Cagra.4326s0003 2.0kb downstream 2.0kb downstream 7627 true Scaffold4326: 5784-13410 Capsella grandiflora
Cagra.4326s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold4326: 11411-13410 Capsella grandiflora
Cagra.4326s0003 5.0kb upstream 5.0kb upstream 10627 true Scaffold4326: 784-11410 Capsella grandiflora
Cagra.4326s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold4326: 784-5783 Capsella grandiflora
Cagra.4326s0003 5.0kb downstream 5.0kb downstream 10627 true Scaffold4326: 5784-16410 Capsella grandiflora
Cagra.4326s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold4326: 11411-16410 Capsella grandiflora
Cagra.4326s0003 10.0kb upstream 10.0kb upstream 11410 true Scaffold4326: 1-11410 Capsella grandiflora
Cagra.4326s0003 10.0kb upstream 10.0kb upstream 5783 false Scaffold4326: 1-5783 Capsella grandiflora
Cagra.4326s0003 10.0kb downstream 10.0kb downstream 15627 true Scaffold4326: 5784-21410 Capsella grandiflora
Cagra.4326s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold4326: 11411-21410 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367230 5261 Brassicaceae View MSA
123828718 5264 Brassicales-Malvales View MSA
124338406 5266 SBM View MSA
124247313 5268 Malvidae View MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain