Gene : Cagra.4327s0007 C. grandiflora v1.1
Defline:  (1 of 1) PTHR21266:SF24 - PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC Genomic Order:  7
Name:  ? Cagra.4327s0007 Secondary Identifier:  ? PAC:28914744
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5098 Capsella grandiflora pathologic  
Cgrandiflora PWY-6927 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4327s0007 0.5kb upstream 0.5kb upstream 3035 true Scaffold4327: 20974-24008 Capsella grandiflora
Cagra.4327s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold4327: 23509-24008 Capsella grandiflora
Cagra.4327s0007 0.5kb downstream 0.5kb downstream 3035 true Scaffold4327: 20474-23508 Capsella grandiflora
Cagra.4327s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold4327: 20474-20973 Capsella grandiflora
Cagra.4327s0007 1.0kb upstream 1.0kb upstream 3535 true Scaffold4327: 20974-24508 Capsella grandiflora
Cagra.4327s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold4327: 23509-24508 Capsella grandiflora
Cagra.4327s0007 1.0kb downstream 1.0kb downstream 3535 true Scaffold4327: 19974-23508 Capsella grandiflora
Cagra.4327s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold4327: 19974-20973 Capsella grandiflora
Cagra.4327s0007 2.0kb upstream 2.0kb upstream 4535 true Scaffold4327: 20974-25508 Capsella grandiflora
Cagra.4327s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold4327: 23509-25508 Capsella grandiflora
Cagra.4327s0007 2.0kb downstream 2.0kb downstream 4535 true Scaffold4327: 18974-23508 Capsella grandiflora
Cagra.4327s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold4327: 18974-20973 Capsella grandiflora
Cagra.4327s0007 5.0kb upstream 5.0kb upstream 7535 true Scaffold4327: 20974-28508 Capsella grandiflora
Cagra.4327s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold4327: 23509-28508 Capsella grandiflora
Cagra.4327s0007 5.0kb downstream 5.0kb downstream 7535 true Scaffold4327: 15974-23508 Capsella grandiflora
Cagra.4327s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold4327: 15974-20973 Capsella grandiflora
Cagra.4327s0007 10.0kb upstream 10.0kb upstream 12535 true Scaffold4327: 20974-33508 Capsella grandiflora
Cagra.4327s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold4327: 23509-33508 Capsella grandiflora
Cagra.4327s0007 10.0kb downstream 10.0kb downstream 12535 true Scaffold4327: 10974-23508 Capsella grandiflora
Cagra.4327s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold4327: 10974-20973 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367692 5261 Brassicaceae View MSA
123834068 5264 Brassicales-Malvales View MSA
124342673 5266 SBM View MSA
124241153 5268 Malvidae View MSA
124063848 5270 Rosid View MSA
123748606 5271 Pentapetalae View MSA
122790785 5272 Eudicot View MSA
122042360 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121346632 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain