Gene : Cagra.4396s0009 C. grandiflora v1.1
Defline:  (1 of 42) PF00582 - Universal stress protein family (Usp) Genomic Order:  9
Name:  ? Cagra.4396s0009 Secondary Identifier:  ? PAC:28918059
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4396s0009 0.5kb upstream 0.5kb upstream 2224 true Scaffold4396: 25970-28193 Capsella grandiflora
Cagra.4396s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold4396: 27694-28193 Capsella grandiflora
Cagra.4396s0009 0.5kb downstream 0.5kb downstream 2224 true Scaffold4396: 25470-27693 Capsella grandiflora
Cagra.4396s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold4396: 25470-25969 Capsella grandiflora
Cagra.4396s0009 1.0kb upstream 1.0kb upstream 2724 true Scaffold4396: 25970-28693 Capsella grandiflora
Cagra.4396s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold4396: 27694-28693 Capsella grandiflora
Cagra.4396s0009 1.0kb downstream 1.0kb downstream 2724 true Scaffold4396: 24970-27693 Capsella grandiflora
Cagra.4396s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold4396: 24970-25969 Capsella grandiflora
Cagra.4396s0009 2.0kb upstream 2.0kb upstream 3724 true Scaffold4396: 25970-29693 Capsella grandiflora
Cagra.4396s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold4396: 27694-29693 Capsella grandiflora
Cagra.4396s0009 2.0kb downstream 2.0kb downstream 3724 true Scaffold4396: 23970-27693 Capsella grandiflora
Cagra.4396s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold4396: 23970-25969 Capsella grandiflora
Cagra.4396s0009 5.0kb upstream 5.0kb upstream 6724 true Scaffold4396: 25970-32693 Capsella grandiflora
Cagra.4396s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold4396: 27694-32693 Capsella grandiflora
Cagra.4396s0009 5.0kb downstream 5.0kb downstream 6724 true Scaffold4396: 20970-27693 Capsella grandiflora
Cagra.4396s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold4396: 20970-25969 Capsella grandiflora
Cagra.4396s0009 10.0kb upstream 10.0kb upstream 11724 true Scaffold4396: 25970-37693 Capsella grandiflora
Cagra.4396s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold4396: 27694-37693 Capsella grandiflora
Cagra.4396s0009 10.0kb downstream 10.0kb downstream 11724 true Scaffold4396: 15970-27693 Capsella grandiflora
Cagra.4396s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold4396: 15970-25969 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369838 5261 Brassicaceae View MSA
123835650 5264 Brassicales-Malvales View MSA
124337819 5266 SBM View MSA
124238919 5268 Malvidae View MSA
124063992 5270 Rosid View MSA
123739309 5271 Pentapetalae View MSA
122785643 5272 Eudicot View MSA
122048128 5273 Angiosperm View MSA
121348607 5274 Embryophyte View MSA
123427901 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain