Gene : Cagra.4290s0017 C. grandiflora v1.1
Defline:  (1 of 3) PTHR24093:SF262 - CALCIUM-TRANSPORTING ATPASE 2, PLASMA MEMBRANE-TYPE-RELATED Genomic Order:  17
Name:  ? Cagra.4290s0017 Secondary Identifier:  ? PAC:28906902
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4290s0017 0.5kb upstream 0.5kb upstream 4676 true Scaffold4290: 70377-75052 Capsella grandiflora
Cagra.4290s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold4290: 70377-70876 Capsella grandiflora
Cagra.4290s0017 0.5kb downstream 0.5kb downstream 4676 true Scaffold4290: 70877-75552 Capsella grandiflora
Cagra.4290s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold4290: 75053-75552 Capsella grandiflora
Cagra.4290s0017 1.0kb upstream 1.0kb upstream 5176 true Scaffold4290: 69877-75052 Capsella grandiflora
Cagra.4290s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold4290: 69877-70876 Capsella grandiflora
Cagra.4290s0017 1.0kb downstream 1.0kb downstream 5176 true Scaffold4290: 70877-76052 Capsella grandiflora
Cagra.4290s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold4290: 75053-76052 Capsella grandiflora
Cagra.4290s0017 2.0kb upstream 2.0kb upstream 6176 true Scaffold4290: 68877-75052 Capsella grandiflora
Cagra.4290s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold4290: 68877-70876 Capsella grandiflora
Cagra.4290s0017 2.0kb downstream 2.0kb downstream 6176 true Scaffold4290: 70877-77052 Capsella grandiflora
Cagra.4290s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold4290: 75053-77052 Capsella grandiflora
Cagra.4290s0017 5.0kb upstream 5.0kb upstream 9176 true Scaffold4290: 65877-75052 Capsella grandiflora
Cagra.4290s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold4290: 65877-70876 Capsella grandiflora
Cagra.4290s0017 5.0kb downstream 5.0kb downstream 9176 true Scaffold4290: 70877-80052 Capsella grandiflora
Cagra.4290s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold4290: 75053-80052 Capsella grandiflora
Cagra.4290s0017 10.0kb upstream 10.0kb upstream 14176 true Scaffold4290: 60877-75052 Capsella grandiflora
Cagra.4290s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold4290: 60877-70876 Capsella grandiflora
Cagra.4290s0017 10.0kb downstream 10.0kb downstream 14176 true Scaffold4290: 70877-85052 Capsella grandiflora
Cagra.4290s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold4290: 75053-85052 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376830 5261 Brassicaceae View MSA
123839604 5264 Brassicales-Malvales View MSA
124343745 5266 SBM View MSA
124238612 5268 Malvidae View MSA
124067452 5270 Rosid View MSA
123746765 5271 Pentapetalae View MSA
122788343 5272 Eudicot View MSA
122047165 5273 Angiosperm View MSA
121349207 5274 Embryophyte View MSA
123428805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain