Gene : Cagra.4290s0020 C. grandiflora v1.1
Defline:  (1 of 1) PF00006//PF00306//PF02874//PF11421 - ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) // ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C) // ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) // ATP synthase F1 beta subunit (Synthase_beta) Genomic Order:  20
Name:  ? Cagra.4290s0020 Secondary Identifier:  ? PAC:28906895
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6126 Capsella grandiflora pathologic  
Cgrandiflora PWY-7219 Capsella grandiflora pathologic  
Cgrandiflora PWY-7229 Capsella grandiflora pathologic  
Cgrandiflora PWY-841 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4290s0020 0.5kb upstream 0.5kb upstream 3350 true Scaffold4290: 87439-90788 Capsella grandiflora
Cagra.4290s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold4290: 87439-87938 Capsella grandiflora
Cagra.4290s0020 0.5kb downstream 0.5kb downstream 3350 true Scaffold4290: 87939-91288 Capsella grandiflora
Cagra.4290s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold4290: 90789-91288 Capsella grandiflora
Cagra.4290s0020 1.0kb upstream 1.0kb upstream 3850 true Scaffold4290: 86939-90788 Capsella grandiflora
Cagra.4290s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold4290: 86939-87938 Capsella grandiflora
Cagra.4290s0020 1.0kb downstream 1.0kb downstream 3850 true Scaffold4290: 87939-91788 Capsella grandiflora
Cagra.4290s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold4290: 90789-91788 Capsella grandiflora
Cagra.4290s0020 2.0kb upstream 2.0kb upstream 4850 true Scaffold4290: 85939-90788 Capsella grandiflora
Cagra.4290s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold4290: 85939-87938 Capsella grandiflora
Cagra.4290s0020 2.0kb downstream 2.0kb downstream 4850 true Scaffold4290: 87939-92788 Capsella grandiflora
Cagra.4290s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold4290: 90789-92788 Capsella grandiflora
Cagra.4290s0020 5.0kb upstream 5.0kb upstream 7850 true Scaffold4290: 82939-90788 Capsella grandiflora
Cagra.4290s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold4290: 82939-87938 Capsella grandiflora
Cagra.4290s0020 5.0kb downstream 5.0kb downstream 7850 true Scaffold4290: 87939-95788 Capsella grandiflora
Cagra.4290s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold4290: 90789-95788 Capsella grandiflora
Cagra.4290s0020 10.0kb upstream 10.0kb upstream 12850 true Scaffold4290: 77939-90788 Capsella grandiflora
Cagra.4290s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold4290: 77939-87938 Capsella grandiflora
Cagra.4290s0020 10.0kb downstream 10.0kb downstream 12850 true Scaffold4290: 87939-100788 Capsella grandiflora
Cagra.4290s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold4290: 90789-100788 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365207 5261 Brassicaceae View MSA
123831006 5264 Brassicales-Malvales View MSA
124350602 5266 SBM View MSA
124250549 5268 Malvidae View MSA
124072402 5270 Rosid View MSA
123749962 5271 Pentapetalae View MSA
122797810 5272 Eudicot View MSA
122051511 5273 Angiosperm View MSA
121351676 5274 Embryophyte View MSA
123424920 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain