Gene : Cagra.4190s0009 C. grandiflora v1.1
Defline:  (1 of 3) PTHR12183:SF16 - PROTEIN ABERRANT POLLEN DEVELOPMENT 1-RELATED Genomic Order:  9
Name:  ? Cagra.4190s0009 Secondary Identifier:  ? PAC:28906402
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4190s0009 0.5kb upstream 0.5kb upstream 3167 true Scaffold4190: 29458-32624 Capsella grandiflora
Cagra.4190s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold4190: 29458-29957 Capsella grandiflora
Cagra.4190s0009 0.5kb downstream 0.5kb downstream 3167 true Scaffold4190: 29958-33124 Capsella grandiflora
Cagra.4190s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold4190: 32625-33124 Capsella grandiflora
Cagra.4190s0009 1.0kb upstream 1.0kb upstream 3667 true Scaffold4190: 28958-32624 Capsella grandiflora
Cagra.4190s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold4190: 28958-29957 Capsella grandiflora
Cagra.4190s0009 1.0kb downstream 1.0kb downstream 3667 true Scaffold4190: 29958-33624 Capsella grandiflora
Cagra.4190s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold4190: 32625-33624 Capsella grandiflora
Cagra.4190s0009 2.0kb upstream 2.0kb upstream 4667 true Scaffold4190: 27958-32624 Capsella grandiflora
Cagra.4190s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold4190: 27958-29957 Capsella grandiflora
Cagra.4190s0009 2.0kb downstream 2.0kb downstream 4667 true Scaffold4190: 29958-34624 Capsella grandiflora
Cagra.4190s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold4190: 32625-34624 Capsella grandiflora
Cagra.4190s0009 5.0kb upstream 5.0kb upstream 7667 true Scaffold4190: 24958-32624 Capsella grandiflora
Cagra.4190s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold4190: 24958-29957 Capsella grandiflora
Cagra.4190s0009 5.0kb downstream 5.0kb downstream 7667 true Scaffold4190: 29958-37624 Capsella grandiflora
Cagra.4190s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold4190: 32625-37624 Capsella grandiflora
Cagra.4190s0009 10.0kb upstream 10.0kb upstream 12667 true Scaffold4190: 19958-32624 Capsella grandiflora
Cagra.4190s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold4190: 19958-29957 Capsella grandiflora
Cagra.4190s0009 10.0kb downstream 10.0kb downstream 12667 true Scaffold4190: 29958-42624 Capsella grandiflora
Cagra.4190s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold4190: 32625-42624 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122792833 5272 Eudicot View MSA
122376606 5261 Brassicaceae View MSA
123838874 5264 Brassicales-Malvales View MSA
124344193 5266 SBM View MSA
124250832 5268 Malvidae View MSA
124070780 5270 Rosid View MSA
123741557 5271 Pentapetalae View MSA
122042274 5273 Angiosperm View MSA
121349312 5274 Embryophyte View MSA
123381271 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain