Gene : Cagra.4195s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR20852:SF53 - GLUTAMINE SYNTHETASE, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  4
Name:  ? Cagra.4195s0004 Secondary Identifier:  ? PAC:28914489
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLNSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3282 Capsella grandiflora pathologic  
Cgrandiflora PWY-381 Capsella grandiflora pathologic  
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  
Cgrandiflora PWY-6963 Capsella grandiflora pathologic  
Cgrandiflora PWY-6964 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4195s0004 0.5kb upstream 0.5kb upstream 3360 true Scaffold4195: 6517-9876 Capsella grandiflora
Cagra.4195s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold4195: 9377-9876 Capsella grandiflora
Cagra.4195s0004 0.5kb downstream 0.5kb downstream 3360 true Scaffold4195: 6017-9376 Capsella grandiflora
Cagra.4195s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold4195: 6017-6516 Capsella grandiflora
Cagra.4195s0004 1.0kb upstream 1.0kb upstream 3860 true Scaffold4195: 6517-10376 Capsella grandiflora
Cagra.4195s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold4195: 9377-10376 Capsella grandiflora
Cagra.4195s0004 1.0kb downstream 1.0kb downstream 3860 true Scaffold4195: 5517-9376 Capsella grandiflora
Cagra.4195s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold4195: 5517-6516 Capsella grandiflora
Cagra.4195s0004 2.0kb upstream 2.0kb upstream 4860 true Scaffold4195: 6517-11376 Capsella grandiflora
Cagra.4195s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold4195: 9377-11376 Capsella grandiflora
Cagra.4195s0004 2.0kb downstream 2.0kb downstream 4860 true Scaffold4195: 4517-9376 Capsella grandiflora
Cagra.4195s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold4195: 4517-6516 Capsella grandiflora
Cagra.4195s0004 5.0kb upstream 5.0kb upstream 7860 true Scaffold4195: 6517-14376 Capsella grandiflora
Cagra.4195s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold4195: 9377-14376 Capsella grandiflora
Cagra.4195s0004 5.0kb downstream 5.0kb downstream 7860 true Scaffold4195: 1517-9376 Capsella grandiflora
Cagra.4195s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold4195: 1517-6516 Capsella grandiflora
Cagra.4195s0004 10.0kb upstream 10.0kb upstream 12860 true Scaffold4195: 6517-19376 Capsella grandiflora
Cagra.4195s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold4195: 9377-19376 Capsella grandiflora
Cagra.4195s0004 10.0kb downstream 10.0kb downstream 9376 true Scaffold4195: 1-9376 Capsella grandiflora
Cagra.4195s0004 10.0kb downstream 10.0kb downstream 6516 false Scaffold4195: 1-6516 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363026 5261 Brassicaceae View MSA
123834963 5264 Brassicales-Malvales View MSA
124336894 5266 SBM View MSA
124240193 5268 Malvidae View MSA
124069672 5270 Rosid View MSA
123741738 5271 Pentapetalae View MSA
122788688 5272 Eudicot View MSA
122046528 5273 Angiosperm View MSA
121310618 5274 Embryophyte View MSA
123428761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain