Gene : Cagra.5650s0015 C. grandiflora v1.1
Defline:  (1 of 2) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  15
Name:  ? Cagra.5650s0015 Secondary Identifier:  ? PAC:28907153
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5650s0015 0.5kb upstream 0.5kb upstream 4077 true Scaffold5650: 59583-63659 Capsella grandiflora
Cagra.5650s0015 0.5kb upstream 0.5kb upstream 500 false Scaffold5650: 63160-63659 Capsella grandiflora
Cagra.5650s0015 0.5kb downstream 0.5kb downstream 4077 true Scaffold5650: 59083-63159 Capsella grandiflora
Cagra.5650s0015 0.5kb downstream 0.5kb downstream 500 false Scaffold5650: 59083-59582 Capsella grandiflora
Cagra.5650s0015 1.0kb upstream 1.0kb upstream 4577 true Scaffold5650: 59583-64159 Capsella grandiflora
Cagra.5650s0015 1.0kb upstream 1.0kb upstream 1000 false Scaffold5650: 63160-64159 Capsella grandiflora
Cagra.5650s0015 1.0kb downstream 1.0kb downstream 4577 true Scaffold5650: 58583-63159 Capsella grandiflora
Cagra.5650s0015 1.0kb downstream 1.0kb downstream 1000 false Scaffold5650: 58583-59582 Capsella grandiflora
Cagra.5650s0015 2.0kb upstream 2.0kb upstream 5577 true Scaffold5650: 59583-65159 Capsella grandiflora
Cagra.5650s0015 2.0kb upstream 2.0kb upstream 2000 false Scaffold5650: 63160-65159 Capsella grandiflora
Cagra.5650s0015 2.0kb downstream 2.0kb downstream 5577 true Scaffold5650: 57583-63159 Capsella grandiflora
Cagra.5650s0015 2.0kb downstream 2.0kb downstream 2000 false Scaffold5650: 57583-59582 Capsella grandiflora
Cagra.5650s0015 5.0kb upstream 5.0kb upstream 8577 true Scaffold5650: 59583-68159 Capsella grandiflora
Cagra.5650s0015 5.0kb upstream 5.0kb upstream 5000 false Scaffold5650: 63160-68159 Capsella grandiflora
Cagra.5650s0015 5.0kb downstream 5.0kb downstream 8577 true Scaffold5650: 54583-63159 Capsella grandiflora
Cagra.5650s0015 5.0kb downstream 5.0kb downstream 5000 false Scaffold5650: 54583-59582 Capsella grandiflora
Cagra.5650s0015 10.0kb upstream 10.0kb upstream 13577 true Scaffold5650: 59583-73159 Capsella grandiflora
Cagra.5650s0015 10.0kb upstream 10.0kb upstream 10000 false Scaffold5650: 63160-73159 Capsella grandiflora
Cagra.5650s0015 10.0kb downstream 10.0kb downstream 13577 true Scaffold5650: 49583-63159 Capsella grandiflora
Cagra.5650s0015 10.0kb downstream 10.0kb downstream 10000 false Scaffold5650: 49583-59582 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375751 5261 Brassicaceae View MSA
123832680 5264 Brassicales-Malvales View MSA
124337597 5266 SBM View MSA
124241900 5268 Malvidae View MSA
124063737 5270 Rosid View MSA
123738222 5271 Pentapetalae View MSA
122796833 5272 Eudicot View MSA
122044630 5273 Angiosperm View MSA
121346457 5274 Embryophyte View MSA
123428846 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain