Gene : Cagra.5380s0003 C. grandiflora v1.1
Defline:  (1 of 3) PTHR12300:SF26 - HVA22-LIKE PROTEIN G-RELATED Genomic Order:  3
Name:  ? Cagra.5380s0003 Secondary Identifier:  ? PAC:28915382
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5380s0003 0.5kb upstream 0.5kb upstream 2386 true Scaffold5380: 11929-14314 Capsella grandiflora
Cagra.5380s0003 0.5kb upstream 0.5kb upstream 396 false Scaffold5380: 13919-14314 Capsella grandiflora
Cagra.5380s0003 0.5kb downstream 0.5kb downstream 2490 true Scaffold5380: 11429-13918 Capsella grandiflora
Cagra.5380s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold5380: 11429-11928 Capsella grandiflora
Cagra.5380s0003 1.0kb upstream 1.0kb upstream 2386 true Scaffold5380: 11929-14314 Capsella grandiflora
Cagra.5380s0003 1.0kb upstream 1.0kb upstream 396 false Scaffold5380: 13919-14314 Capsella grandiflora
Cagra.5380s0003 1.0kb downstream 1.0kb downstream 2990 true Scaffold5380: 10929-13918 Capsella grandiflora
Cagra.5380s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold5380: 10929-11928 Capsella grandiflora
Cagra.5380s0003 2.0kb upstream 2.0kb upstream 2386 true Scaffold5380: 11929-14314 Capsella grandiflora
Cagra.5380s0003 2.0kb upstream 2.0kb upstream 396 false Scaffold5380: 13919-14314 Capsella grandiflora
Cagra.5380s0003 2.0kb downstream 2.0kb downstream 3990 true Scaffold5380: 9929-13918 Capsella grandiflora
Cagra.5380s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold5380: 9929-11928 Capsella grandiflora
Cagra.5380s0003 5.0kb upstream 5.0kb upstream 2386 true Scaffold5380: 11929-14314 Capsella grandiflora
Cagra.5380s0003 5.0kb upstream 5.0kb upstream 396 false Scaffold5380: 13919-14314 Capsella grandiflora
Cagra.5380s0003 5.0kb downstream 5.0kb downstream 6990 true Scaffold5380: 6929-13918 Capsella grandiflora
Cagra.5380s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold5380: 6929-11928 Capsella grandiflora
Cagra.5380s0003 10.0kb upstream 10.0kb upstream 2386 true Scaffold5380: 11929-14314 Capsella grandiflora
Cagra.5380s0003 10.0kb upstream 10.0kb upstream 396 false Scaffold5380: 13919-14314 Capsella grandiflora
Cagra.5380s0003 10.0kb downstream 10.0kb downstream 11990 true Scaffold5380: 1929-13918 Capsella grandiflora
Cagra.5380s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold5380: 1929-11928 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362599 5261 Brassicaceae View MSA
123837415 5264 Brassicales-Malvales View MSA
124340785 5266 SBM View MSA
124237272 5268 Malvidae View MSA
124068207 5270 Rosid View MSA
123753523 5271 Pentapetalae View MSA
122794920 5272 Eudicot View MSA
122050664 5273 Angiosperm View MSA
121348530 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain