Gene : Cagra.5392s0006 C. grandiflora v1.1
Defline:  (1 of 1) KOG2483 - Upstream transcription factor 2/L-myc-2 protein Genomic Order:  6
Name:  ? Cagra.5392s0006 Secondary Identifier:  ? PAC:28906910
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5392s0006 0.5kb upstream 0.5kb upstream 2158 true Scaffold5392: 30076-32233 Capsella grandiflora
Cagra.5392s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold5392: 30076-30575 Capsella grandiflora
Cagra.5392s0006 0.5kb downstream 0.5kb downstream 2158 true Scaffold5392: 30576-32733 Capsella grandiflora
Cagra.5392s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold5392: 32234-32733 Capsella grandiflora
Cagra.5392s0006 1.0kb upstream 1.0kb upstream 2658 true Scaffold5392: 29576-32233 Capsella grandiflora
Cagra.5392s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold5392: 29576-30575 Capsella grandiflora
Cagra.5392s0006 1.0kb downstream 1.0kb downstream 2658 true Scaffold5392: 30576-33233 Capsella grandiflora
Cagra.5392s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold5392: 32234-33233 Capsella grandiflora
Cagra.5392s0006 2.0kb upstream 2.0kb upstream 3658 true Scaffold5392: 28576-32233 Capsella grandiflora
Cagra.5392s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold5392: 28576-30575 Capsella grandiflora
Cagra.5392s0006 2.0kb downstream 2.0kb downstream 3658 true Scaffold5392: 30576-34233 Capsella grandiflora
Cagra.5392s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold5392: 32234-34233 Capsella grandiflora
Cagra.5392s0006 5.0kb upstream 5.0kb upstream 6658 true Scaffold5392: 25576-32233 Capsella grandiflora
Cagra.5392s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold5392: 25576-30575 Capsella grandiflora
Cagra.5392s0006 5.0kb downstream 5.0kb downstream 3697 true Scaffold5392: 30576-34272 Capsella grandiflora
Cagra.5392s0006 5.0kb downstream 5.0kb downstream 2039 false Scaffold5392: 32234-34272 Capsella grandiflora
Cagra.5392s0006 10.0kb upstream 10.0kb upstream 11658 true Scaffold5392: 20576-32233 Capsella grandiflora
Cagra.5392s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold5392: 20576-30575 Capsella grandiflora
Cagra.5392s0006 10.0kb downstream 10.0kb downstream 3697 true Scaffold5392: 30576-34272 Capsella grandiflora
Cagra.5392s0006 10.0kb downstream 10.0kb downstream 2039 false Scaffold5392: 32234-34272 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365918 5261 Brassicaceae View MSA
123836770 5264 Brassicales-Malvales View MSA
124342439 5266 SBM View MSA
124250996 5268 Malvidae View MSA
124070459 5270 Rosid View MSA
123749435 5271 Pentapetalae View MSA
122795103 5272 Eudicot View MSA
122042005 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain