Gene : Cagra.5323s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13301:SF60 - CELLULOSE SYNTHASE-LIKE PROTEIN E1 Genomic Order:  10
Name:  ? Cagra.5323s0010 Secondary Identifier:  ? PAC:28917307
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1001 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5323s0010 0.5kb upstream 0.5kb upstream 3174 true Scaffold5323: 32679-35852 Capsella grandiflora
Cagra.5323s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold5323: 35353-35852 Capsella grandiflora
Cagra.5323s0010 0.5kb downstream 0.5kb downstream 3174 true Scaffold5323: 32179-35352 Capsella grandiflora
Cagra.5323s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold5323: 32179-32678 Capsella grandiflora
Cagra.5323s0010 1.0kb upstream 1.0kb upstream 3674 true Scaffold5323: 32679-36352 Capsella grandiflora
Cagra.5323s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold5323: 35353-36352 Capsella grandiflora
Cagra.5323s0010 1.0kb downstream 1.0kb downstream 3674 true Scaffold5323: 31679-35352 Capsella grandiflora
Cagra.5323s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold5323: 31679-32678 Capsella grandiflora
Cagra.5323s0010 2.0kb upstream 2.0kb upstream 4674 true Scaffold5323: 32679-37352 Capsella grandiflora
Cagra.5323s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold5323: 35353-37352 Capsella grandiflora
Cagra.5323s0010 2.0kb downstream 2.0kb downstream 4674 true Scaffold5323: 30679-35352 Capsella grandiflora
Cagra.5323s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold5323: 30679-32678 Capsella grandiflora
Cagra.5323s0010 5.0kb upstream 5.0kb upstream 7674 true Scaffold5323: 32679-40352 Capsella grandiflora
Cagra.5323s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold5323: 35353-40352 Capsella grandiflora
Cagra.5323s0010 5.0kb downstream 5.0kb downstream 7674 true Scaffold5323: 27679-35352 Capsella grandiflora
Cagra.5323s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold5323: 27679-32678 Capsella grandiflora
Cagra.5323s0010 10.0kb upstream 10.0kb upstream 12674 true Scaffold5323: 32679-45352 Capsella grandiflora
Cagra.5323s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold5323: 35353-45352 Capsella grandiflora
Cagra.5323s0010 10.0kb downstream 10.0kb downstream 12674 true Scaffold5323: 22679-35352 Capsella grandiflora
Cagra.5323s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold5323: 22679-32678 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371179 5261 Brassicaceae View MSA
123830596 5264 Brassicales-Malvales View MSA
124339465 5266 SBM View MSA
124237130 5268 Malvidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain