Gene : Cagra.5647s0003 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11624:SF76 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED Genomic Order:  3
Name:  ? Cagra.5647s0003 Secondary Identifier:  ? PAC:28905057
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5173 Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PYRUVDEHYD-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5647s0003 0.5kb upstream 0.5kb upstream 2835 true Scaffold5647: 5596-8430 Capsella grandiflora
Cagra.5647s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold5647: 5596-6095 Capsella grandiflora
Cagra.5647s0003 0.5kb downstream 0.5kb downstream 2835 true Scaffold5647: 6096-8930 Capsella grandiflora
Cagra.5647s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold5647: 8431-8930 Capsella grandiflora
Cagra.5647s0003 1.0kb upstream 1.0kb upstream 3335 true Scaffold5647: 5096-8430 Capsella grandiflora
Cagra.5647s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold5647: 5096-6095 Capsella grandiflora
Cagra.5647s0003 1.0kb downstream 1.0kb downstream 3335 true Scaffold5647: 6096-9430 Capsella grandiflora
Cagra.5647s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold5647: 8431-9430 Capsella grandiflora
Cagra.5647s0003 2.0kb upstream 2.0kb upstream 4335 true Scaffold5647: 4096-8430 Capsella grandiflora
Cagra.5647s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold5647: 4096-6095 Capsella grandiflora
Cagra.5647s0003 2.0kb downstream 2.0kb downstream 4335 true Scaffold5647: 6096-10430 Capsella grandiflora
Cagra.5647s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold5647: 8431-10430 Capsella grandiflora
Cagra.5647s0003 5.0kb upstream 5.0kb upstream 7335 true Scaffold5647: 1096-8430 Capsella grandiflora
Cagra.5647s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold5647: 1096-6095 Capsella grandiflora
Cagra.5647s0003 5.0kb downstream 5.0kb downstream 7335 true Scaffold5647: 6096-13430 Capsella grandiflora
Cagra.5647s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold5647: 8431-13430 Capsella grandiflora
Cagra.5647s0003 10.0kb upstream 10.0kb upstream 8430 true Scaffold5647: 1-8430 Capsella grandiflora
Cagra.5647s0003 10.0kb upstream 10.0kb upstream 6095 false Scaffold5647: 1-6095 Capsella grandiflora
Cagra.5647s0003 10.0kb downstream 10.0kb downstream 12335 true Scaffold5647: 6096-18430 Capsella grandiflora
Cagra.5647s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold5647: 8431-18430 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365093 5261 Brassicaceae View MSA
123840734 5264 Brassicales-Malvales View MSA
124338432 5266 SBM View MSA
124241225 5268 Malvidae View MSA
124062960 5270 Rosid View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain