Gene : Cagra.5131s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31412:SF5 - ZINC METALLOPROTEASE EGY2, CHLOROPLASTIC-RELATED Genomic Order:  2
Name:  ? Cagra.5131s0002 Secondary Identifier:  ? PAC:28908151
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5131s0002 0.5kb upstream 0.5kb upstream 3651 true Scaffold5131: 7981-11631 Capsella grandiflora
Cagra.5131s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold5131: 11132-11631 Capsella grandiflora
Cagra.5131s0002 0.5kb downstream 0.5kb downstream 3651 true Scaffold5131: 7481-11131 Capsella grandiflora
Cagra.5131s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold5131: 7481-7980 Capsella grandiflora
Cagra.5131s0002 1.0kb upstream 1.0kb upstream 4151 true Scaffold5131: 7981-12131 Capsella grandiflora
Cagra.5131s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold5131: 11132-12131 Capsella grandiflora
Cagra.5131s0002 1.0kb downstream 1.0kb downstream 4151 true Scaffold5131: 6981-11131 Capsella grandiflora
Cagra.5131s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold5131: 6981-7980 Capsella grandiflora
Cagra.5131s0002 2.0kb upstream 2.0kb upstream 5151 true Scaffold5131: 7981-13131 Capsella grandiflora
Cagra.5131s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold5131: 11132-13131 Capsella grandiflora
Cagra.5131s0002 2.0kb downstream 2.0kb downstream 5151 true Scaffold5131: 5981-11131 Capsella grandiflora
Cagra.5131s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold5131: 5981-7980 Capsella grandiflora
Cagra.5131s0002 5.0kb upstream 5.0kb upstream 8151 true Scaffold5131: 7981-16131 Capsella grandiflora
Cagra.5131s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold5131: 11132-16131 Capsella grandiflora
Cagra.5131s0002 5.0kb downstream 5.0kb downstream 8151 true Scaffold5131: 2981-11131 Capsella grandiflora
Cagra.5131s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold5131: 2981-7980 Capsella grandiflora
Cagra.5131s0002 10.0kb upstream 10.0kb upstream 13151 true Scaffold5131: 7981-21131 Capsella grandiflora
Cagra.5131s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold5131: 11132-21131 Capsella grandiflora
Cagra.5131s0002 10.0kb downstream 10.0kb downstream 11131 true Scaffold5131: 1-11131 Capsella grandiflora
Cagra.5131s0002 10.0kb downstream 10.0kb downstream 7980 false Scaffold5131: 1-7980 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373446 5261 Brassicaceae View MSA
123834599 5264 Brassicales-Malvales View MSA
124341075 5266 SBM View MSA
124242686 5268 Malvidae View MSA
124061333 5270 Rosid View MSA
123739814 5271 Pentapetalae View MSA
122788407 5272 Eudicot View MSA
122044367 5273 Angiosperm View MSA
121345535 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain