Gene : Cagra.5133s0002 C. grandiflora v1.1
Defline:  (1 of 4) PTHR12446:SF14 - PROTEIN LIN-54 HOMOLOG Genomic Order:  2
Name:  ? Cagra.5133s0002 Secondary Identifier:  ? PAC:28915393
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5133s0002 0.5kb upstream 0.5kb upstream 3806 true Scaffold5133: 6936-10741 Capsella grandiflora
Cagra.5133s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold5133: 10242-10741 Capsella grandiflora
Cagra.5133s0002 0.5kb downstream 0.5kb downstream 3806 true Scaffold5133: 6436-10241 Capsella grandiflora
Cagra.5133s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold5133: 6436-6935 Capsella grandiflora
Cagra.5133s0002 1.0kb upstream 1.0kb upstream 4306 true Scaffold5133: 6936-11241 Capsella grandiflora
Cagra.5133s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold5133: 10242-11241 Capsella grandiflora
Cagra.5133s0002 1.0kb downstream 1.0kb downstream 4306 true Scaffold5133: 5936-10241 Capsella grandiflora
Cagra.5133s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold5133: 5936-6935 Capsella grandiflora
Cagra.5133s0002 2.0kb upstream 2.0kb upstream 5306 true Scaffold5133: 6936-12241 Capsella grandiflora
Cagra.5133s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold5133: 10242-12241 Capsella grandiflora
Cagra.5133s0002 2.0kb downstream 2.0kb downstream 5306 true Scaffold5133: 4936-10241 Capsella grandiflora
Cagra.5133s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold5133: 4936-6935 Capsella grandiflora
Cagra.5133s0002 5.0kb upstream 5.0kb upstream 8306 true Scaffold5133: 6936-15241 Capsella grandiflora
Cagra.5133s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold5133: 10242-15241 Capsella grandiflora
Cagra.5133s0002 5.0kb downstream 5.0kb downstream 8306 true Scaffold5133: 1936-10241 Capsella grandiflora
Cagra.5133s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold5133: 1936-6935 Capsella grandiflora
Cagra.5133s0002 10.0kb upstream 10.0kb upstream 13306 true Scaffold5133: 6936-20241 Capsella grandiflora
Cagra.5133s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold5133: 10242-20241 Capsella grandiflora
Cagra.5133s0002 10.0kb downstream 10.0kb downstream 10241 true Scaffold5133: 1-10241 Capsella grandiflora
Cagra.5133s0002 10.0kb downstream 10.0kb downstream 6935 false Scaffold5133: 1-6935 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368040 5261 Brassicaceae View MSA
123837236 5264 Brassicales-Malvales View MSA
124337000 5266 SBM View MSA
124241299 5268 Malvidae View MSA
124069206 5270 Rosid View MSA
123746618 5271 Pentapetalae View MSA
122795390 5272 Eudicot View MSA
122042831 5273 Angiosperm View MSA
121349847 5274 Embryophyte View MSA
123426596 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain