Gene : Cagra.5070s0009 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12879 - SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2 Genomic Order:  9
Name:  ? Cagra.5070s0009 Secondary Identifier:  ? PAC:28901588
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5070s0009 0.5kb upstream 0.5kb upstream 2094 true Scaffold5070: 42908-45001 Capsella grandiflora
Cagra.5070s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold5070: 42908-43407 Capsella grandiflora
Cagra.5070s0009 0.5kb downstream 0.5kb downstream 2094 true Scaffold5070: 43408-45501 Capsella grandiflora
Cagra.5070s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold5070: 45002-45501 Capsella grandiflora
Cagra.5070s0009 1.0kb upstream 1.0kb upstream 2594 true Scaffold5070: 42408-45001 Capsella grandiflora
Cagra.5070s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold5070: 42408-43407 Capsella grandiflora
Cagra.5070s0009 1.0kb downstream 1.0kb downstream 2594 true Scaffold5070: 43408-46001 Capsella grandiflora
Cagra.5070s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold5070: 45002-46001 Capsella grandiflora
Cagra.5070s0009 2.0kb upstream 2.0kb upstream 3594 true Scaffold5070: 41408-45001 Capsella grandiflora
Cagra.5070s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold5070: 41408-43407 Capsella grandiflora
Cagra.5070s0009 2.0kb downstream 2.0kb downstream 3594 true Scaffold5070: 43408-47001 Capsella grandiflora
Cagra.5070s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold5070: 45002-47001 Capsella grandiflora
Cagra.5070s0009 5.0kb upstream 5.0kb upstream 6594 true Scaffold5070: 38408-45001 Capsella grandiflora
Cagra.5070s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold5070: 38408-43407 Capsella grandiflora
Cagra.5070s0009 5.0kb downstream 5.0kb downstream 6594 true Scaffold5070: 43408-50001 Capsella grandiflora
Cagra.5070s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold5070: 45002-50001 Capsella grandiflora
Cagra.5070s0009 10.0kb upstream 10.0kb upstream 11594 true Scaffold5070: 33408-45001 Capsella grandiflora
Cagra.5070s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold5070: 33408-43407 Capsella grandiflora
Cagra.5070s0009 10.0kb downstream 10.0kb downstream 11594 true Scaffold5070: 43408-55001 Capsella grandiflora
Cagra.5070s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold5070: 45002-55001 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378462 5261 Brassicaceae View MSA
123836824 5264 Brassicales-Malvales View MSA
124350792 5266 SBM View MSA
124246231 5268 Malvidae View MSA
124069384 5270 Rosid View MSA
123741944 5271 Pentapetalae View MSA
122796748 5272 Eudicot View MSA
122048709 5273 Angiosperm View MSA
121348431 5274 Embryophyte View MSA
123425717 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain