Gene : Cagra.5105s0005 C. grandiflora v1.1
Defline:  (1 of 84) PF02362 - B3 DNA binding domain (B3) Genomic Order:  5
Name:  ? Cagra.5105s0005 Secondary Identifier:  ? PAC:28905328
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5105s0005 0.5kb upstream 0.5kb upstream 1440 true Scaffold5105: 17957-19396 Capsella grandiflora
Cagra.5105s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold5105: 18897-19396 Capsella grandiflora
Cagra.5105s0005 0.5kb downstream 0.5kb downstream 1440 true Scaffold5105: 17457-18896 Capsella grandiflora
Cagra.5105s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold5105: 17457-17956 Capsella grandiflora
Cagra.5105s0005 1.0kb upstream 1.0kb upstream 1940 true Scaffold5105: 17957-19896 Capsella grandiflora
Cagra.5105s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold5105: 18897-19896 Capsella grandiflora
Cagra.5105s0005 1.0kb downstream 1.0kb downstream 1940 true Scaffold5105: 16957-18896 Capsella grandiflora
Cagra.5105s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold5105: 16957-17956 Capsella grandiflora
Cagra.5105s0005 2.0kb upstream 2.0kb upstream 2940 true Scaffold5105: 17957-20896 Capsella grandiflora
Cagra.5105s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold5105: 18897-20896 Capsella grandiflora
Cagra.5105s0005 2.0kb downstream 2.0kb downstream 2940 true Scaffold5105: 15957-18896 Capsella grandiflora
Cagra.5105s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold5105: 15957-17956 Capsella grandiflora
Cagra.5105s0005 5.0kb upstream 5.0kb upstream 3481 true Scaffold5105: 17957-21437 Capsella grandiflora
Cagra.5105s0005 5.0kb upstream 5.0kb upstream 2541 false Scaffold5105: 18897-21437 Capsella grandiflora
Cagra.5105s0005 5.0kb downstream 5.0kb downstream 5940 true Scaffold5105: 12957-18896 Capsella grandiflora
Cagra.5105s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold5105: 12957-17956 Capsella grandiflora
Cagra.5105s0005 10.0kb upstream 10.0kb upstream 3481 true Scaffold5105: 17957-21437 Capsella grandiflora
Cagra.5105s0005 10.0kb upstream 10.0kb upstream 2541 false Scaffold5105: 18897-21437 Capsella grandiflora
Cagra.5105s0005 10.0kb downstream 10.0kb downstream 10940 true Scaffold5105: 7957-18896 Capsella grandiflora
Cagra.5105s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold5105: 7957-17956 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369209 5261 Brassicaceae View MSA
123839049 5264 Brassicales-Malvales View MSA
124322543 5266 SBM View MSA
124248132 5268 Malvidae View MSA
124073823 5270 Rosid View MSA
123753418 5271 Pentapetalae View MSA
122797829 5272 Eudicot View MSA
122050133 5273 Angiosperm View MSA
121350826 5274 Embryophyte View MSA
123427153 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain