Gene : Cagra.5198s0003 C. grandiflora v1.1
Defline:  (1 of 1) 1.1.1.284 - S-(hydroxymethyl)glutathione dehydrogenase / NAD-linked formaldehyde dehydrogenase Genomic Order:  3
Name:  ? Cagra.5198s0003 Secondary Identifier:  ? PAC:28899636
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1801 Capsella grandiflora pathologic  
Cgrandiflora PWY-5486 Capsella grandiflora pathologic  
Cgrandiflora PWY-5751 Capsella grandiflora pathologic  
Cgrandiflora PWY-6333 Capsella grandiflora pathologic  
Cgrandiflora PWY66-21 Capsella grandiflora pathologic  
Cgrandiflora PWY66-389 Capsella grandiflora pathologic  
Cgrandiflora PWY-6802 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5198s0003 0.5kb upstream 0.5kb upstream 2809 true Scaffold5198: 6317-9125 Capsella grandiflora
Cagra.5198s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold5198: 8626-9125 Capsella grandiflora
Cagra.5198s0003 0.5kb downstream 0.5kb downstream 2809 true Scaffold5198: 5817-8625 Capsella grandiflora
Cagra.5198s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold5198: 5817-6316 Capsella grandiflora
Cagra.5198s0003 1.0kb upstream 1.0kb upstream 3309 true Scaffold5198: 6317-9625 Capsella grandiflora
Cagra.5198s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold5198: 8626-9625 Capsella grandiflora
Cagra.5198s0003 1.0kb downstream 1.0kb downstream 3309 true Scaffold5198: 5317-8625 Capsella grandiflora
Cagra.5198s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold5198: 5317-6316 Capsella grandiflora
Cagra.5198s0003 2.0kb upstream 2.0kb upstream 4309 true Scaffold5198: 6317-10625 Capsella grandiflora
Cagra.5198s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold5198: 8626-10625 Capsella grandiflora
Cagra.5198s0003 2.0kb downstream 2.0kb downstream 4309 true Scaffold5198: 4317-8625 Capsella grandiflora
Cagra.5198s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold5198: 4317-6316 Capsella grandiflora
Cagra.5198s0003 5.0kb upstream 5.0kb upstream 7309 true Scaffold5198: 6317-13625 Capsella grandiflora
Cagra.5198s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold5198: 8626-13625 Capsella grandiflora
Cagra.5198s0003 5.0kb downstream 5.0kb downstream 7309 true Scaffold5198: 1317-8625 Capsella grandiflora
Cagra.5198s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold5198: 1317-6316 Capsella grandiflora
Cagra.5198s0003 10.0kb upstream 10.0kb upstream 12309 true Scaffold5198: 6317-18625 Capsella grandiflora
Cagra.5198s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold5198: 8626-18625 Capsella grandiflora
Cagra.5198s0003 10.0kb downstream 10.0kb downstream 8625 true Scaffold5198: 1-8625 Capsella grandiflora
Cagra.5198s0003 10.0kb downstream 10.0kb downstream 6316 false Scaffold5198: 1-6316 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367475 5261 Brassicaceae View MSA
123831887 5264 Brassicales-Malvales View MSA
124337937 5266 SBM View MSA
124251337 5268 Malvidae View MSA
124074048 5270 Rosid View MSA
123750363 5271 Pentapetalae View MSA
122796866 5272 Eudicot View MSA
122050713 5273 Angiosperm View MSA
121350624 5274 Embryophyte View MSA
123428625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain