Gene : Cagra.4960s0003 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11945:SF170 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 Genomic Order:  3
Name:  ? Cagra.4960s0003 Secondary Identifier:  ? PAC:28911190
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4960s0003 0.5kb upstream 0.5kb upstream 3041 true Scaffold4960: 13988-17028 Capsella grandiflora
Cagra.4960s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold4960: 13988-14487 Capsella grandiflora
Cagra.4960s0003 0.5kb downstream 0.5kb downstream 3041 true Scaffold4960: 14488-17528 Capsella grandiflora
Cagra.4960s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold4960: 17029-17528 Capsella grandiflora
Cagra.4960s0003 1.0kb upstream 1.0kb upstream 3541 true Scaffold4960: 13488-17028 Capsella grandiflora
Cagra.4960s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold4960: 13488-14487 Capsella grandiflora
Cagra.4960s0003 1.0kb downstream 1.0kb downstream 3541 true Scaffold4960: 14488-18028 Capsella grandiflora
Cagra.4960s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold4960: 17029-18028 Capsella grandiflora
Cagra.4960s0003 2.0kb upstream 2.0kb upstream 4541 true Scaffold4960: 12488-17028 Capsella grandiflora
Cagra.4960s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold4960: 12488-14487 Capsella grandiflora
Cagra.4960s0003 2.0kb downstream 2.0kb downstream 4541 true Scaffold4960: 14488-19028 Capsella grandiflora
Cagra.4960s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold4960: 17029-19028 Capsella grandiflora
Cagra.4960s0003 5.0kb upstream 5.0kb upstream 7541 true Scaffold4960: 9488-17028 Capsella grandiflora
Cagra.4960s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold4960: 9488-14487 Capsella grandiflora
Cagra.4960s0003 5.0kb downstream 5.0kb downstream 7541 true Scaffold4960: 14488-22028 Capsella grandiflora
Cagra.4960s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold4960: 17029-22028 Capsella grandiflora
Cagra.4960s0003 10.0kb upstream 10.0kb upstream 12541 true Scaffold4960: 4488-17028 Capsella grandiflora
Cagra.4960s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold4960: 4488-14487 Capsella grandiflora
Cagra.4960s0003 10.0kb downstream 10.0kb downstream 12541 true Scaffold4960: 14488-27028 Capsella grandiflora
Cagra.4960s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold4960: 17029-27028 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372996 5261 Brassicaceae View MSA
123829277 5264 Brassicales-Malvales View MSA
124348180 5266 SBM View MSA
124253433 5268 Malvidae View MSA
124063483 5270 Rosid View MSA
123747867 5271 Pentapetalae View MSA
122793842 5272 Eudicot View MSA
122049629 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain