Gene : Cagra.5017s0012 C. grandiflora v1.1
Defline:  (1 of 6) PTHR12346:SF8 - PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 1-RELATED Genomic Order:  12
Name:  ? Cagra.5017s0012 Secondary Identifier:  ? PAC:28901910
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5017s0012 0.5kb upstream 0.5kb upstream 7511 true Scaffold5017: 49301-56811 Capsella grandiflora
Cagra.5017s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold5017: 49301-49800 Capsella grandiflora
Cagra.5017s0012 0.5kb downstream 0.5kb downstream 7511 true Scaffold5017: 49801-57311 Capsella grandiflora
Cagra.5017s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold5017: 56812-57311 Capsella grandiflora
Cagra.5017s0012 1.0kb upstream 1.0kb upstream 8011 true Scaffold5017: 48801-56811 Capsella grandiflora
Cagra.5017s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold5017: 48801-49800 Capsella grandiflora
Cagra.5017s0012 1.0kb downstream 1.0kb downstream 8011 true Scaffold5017: 49801-57811 Capsella grandiflora
Cagra.5017s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold5017: 56812-57811 Capsella grandiflora
Cagra.5017s0012 2.0kb upstream 2.0kb upstream 9011 true Scaffold5017: 47801-56811 Capsella grandiflora
Cagra.5017s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold5017: 47801-49800 Capsella grandiflora
Cagra.5017s0012 2.0kb downstream 2.0kb downstream 9011 true Scaffold5017: 49801-58811 Capsella grandiflora
Cagra.5017s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold5017: 56812-58811 Capsella grandiflora
Cagra.5017s0012 5.0kb upstream 5.0kb upstream 12011 true Scaffold5017: 44801-56811 Capsella grandiflora
Cagra.5017s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold5017: 44801-49800 Capsella grandiflora
Cagra.5017s0012 5.0kb downstream 5.0kb downstream 12011 true Scaffold5017: 49801-61811 Capsella grandiflora
Cagra.5017s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold5017: 56812-61811 Capsella grandiflora
Cagra.5017s0012 10.0kb upstream 10.0kb upstream 17011 true Scaffold5017: 39801-56811 Capsella grandiflora
Cagra.5017s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold5017: 39801-49800 Capsella grandiflora
Cagra.5017s0012 10.0kb downstream 10.0kb downstream 15422 true Scaffold5017: 49801-65222 Capsella grandiflora
Cagra.5017s0012 10.0kb downstream 10.0kb downstream 8411 false Scaffold5017: 56812-65222 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510538 5273 Angiosperm View MSA
122365217 5261 Brassicaceae View MSA
123798914 5264 Brassicales-Malvales View MSA
124296488 5266 SBM View MSA
124148624 5268 Malvidae View MSA
123874584 5270 Rosid View MSA
123458533 5271 Pentapetalae View MSA
122493938 5272 Eudicot View MSA
120783632 5274 Embryophyte View MSA
123428507 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain