Gene : Cagra.5058s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11451:SF32 - THREONYL-TRNA SYNTHETASE / THREONINE--TRNA LIGASE-RELATED Genomic Order:  1
Name:  ? Cagra.5058s0001 Secondary Identifier:  ? PAC:28920184
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5058s0001 0.5kb upstream 0.5kb upstream 3630 true Scaffold5058: 4685-8314 Capsella grandiflora
Cagra.5058s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold5058: 4685-5184 Capsella grandiflora
Cagra.5058s0001 0.5kb downstream 0.5kb downstream 3630 true Scaffold5058: 5185-8814 Capsella grandiflora
Cagra.5058s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold5058: 8315-8814 Capsella grandiflora
Cagra.5058s0001 1.0kb upstream 1.0kb upstream 4130 true Scaffold5058: 4185-8314 Capsella grandiflora
Cagra.5058s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold5058: 4185-5184 Capsella grandiflora
Cagra.5058s0001 1.0kb downstream 1.0kb downstream 4130 true Scaffold5058: 5185-9314 Capsella grandiflora
Cagra.5058s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold5058: 8315-9314 Capsella grandiflora
Cagra.5058s0001 2.0kb upstream 2.0kb upstream 5130 true Scaffold5058: 3185-8314 Capsella grandiflora
Cagra.5058s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold5058: 3185-5184 Capsella grandiflora
Cagra.5058s0001 2.0kb downstream 2.0kb downstream 5130 true Scaffold5058: 5185-10314 Capsella grandiflora
Cagra.5058s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold5058: 8315-10314 Capsella grandiflora
Cagra.5058s0001 5.0kb upstream 5.0kb upstream 8130 true Scaffold5058: 185-8314 Capsella grandiflora
Cagra.5058s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold5058: 185-5184 Capsella grandiflora
Cagra.5058s0001 5.0kb downstream 5.0kb downstream 8130 true Scaffold5058: 5185-13314 Capsella grandiflora
Cagra.5058s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold5058: 8315-13314 Capsella grandiflora
Cagra.5058s0001 10.0kb upstream 10.0kb upstream 8314 true Scaffold5058: 1-8314 Capsella grandiflora
Cagra.5058s0001 10.0kb upstream 10.0kb upstream 5184 false Scaffold5058: 1-5184 Capsella grandiflora
Cagra.5058s0001 10.0kb downstream 10.0kb downstream 13130 true Scaffold5058: 5185-18314 Capsella grandiflora
Cagra.5058s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold5058: 8315-18314 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374225 5261 Brassicaceae View MSA
123831933 5264 Brassicales-Malvales View MSA
124337778 5266 SBM View MSA
124251834 5268 Malvidae View MSA
124062778 5270 Rosid View MSA
123739350 5271 Pentapetalae View MSA
122793542 5272 Eudicot View MSA
122044606 5273 Angiosperm View MSA
121343894 5274 Embryophyte View MSA
123425201 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain