Gene : Cagra.4701s0006 C. grandiflora v1.1
Defline:  (1 of 2) PTHR13914 - PROLINE OXIDASE Genomic Order:  6
Name:  ? Cagra.4701s0006 Secondary Identifier:  ? PAC:28917216
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CITRULBIO-PWY Capsella grandiflora pathologic  
Cgrandiflora PROUT-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-6922 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4701s0006 0.5kb upstream 0.5kb upstream 3124 true Scaffold4701: 11221-14344 Capsella grandiflora
Cagra.4701s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold4701: 13845-14344 Capsella grandiflora
Cagra.4701s0006 0.5kb downstream 0.5kb downstream 3124 true Scaffold4701: 10721-13844 Capsella grandiflora
Cagra.4701s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold4701: 10721-11220 Capsella grandiflora
Cagra.4701s0006 1.0kb upstream 1.0kb upstream 3624 true Scaffold4701: 11221-14844 Capsella grandiflora
Cagra.4701s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold4701: 13845-14844 Capsella grandiflora
Cagra.4701s0006 1.0kb downstream 1.0kb downstream 3624 true Scaffold4701: 10221-13844 Capsella grandiflora
Cagra.4701s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold4701: 10221-11220 Capsella grandiflora
Cagra.4701s0006 2.0kb upstream 2.0kb upstream 4624 true Scaffold4701: 11221-15844 Capsella grandiflora
Cagra.4701s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold4701: 13845-15844 Capsella grandiflora
Cagra.4701s0006 2.0kb downstream 2.0kb downstream 4624 true Scaffold4701: 9221-13844 Capsella grandiflora
Cagra.4701s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold4701: 9221-11220 Capsella grandiflora
Cagra.4701s0006 5.0kb upstream 5.0kb upstream 7624 true Scaffold4701: 11221-18844 Capsella grandiflora
Cagra.4701s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold4701: 13845-18844 Capsella grandiflora
Cagra.4701s0006 5.0kb downstream 5.0kb downstream 7624 true Scaffold4701: 6221-13844 Capsella grandiflora
Cagra.4701s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold4701: 6221-11220 Capsella grandiflora
Cagra.4701s0006 10.0kb upstream 10.0kb upstream 12624 true Scaffold4701: 11221-23844 Capsella grandiflora
Cagra.4701s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold4701: 13845-23844 Capsella grandiflora
Cagra.4701s0006 10.0kb downstream 10.0kb downstream 12624 true Scaffold4701: 1221-13844 Capsella grandiflora
Cagra.4701s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold4701: 1221-11220 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366292 5261 Brassicaceae View MSA
123839513 5264 Brassicales-Malvales View MSA
124339055 5266 SBM View MSA
124243556 5268 Malvidae View MSA
124068346 5270 Rosid View MSA
123743697 5271 Pentapetalae View MSA
122792525 5272 Eudicot View MSA
122047709 5273 Angiosperm View MSA
121345691 5274 Embryophyte View MSA
123427745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain